Variant report

Variant	rs854325
Chromosome Location	chr14:25323222-25323223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12887071	1.00[CHD][hapmap]
rs12889497	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12893848	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12894282	1.00[CHD][hapmap]
rs1461644	0.84[MEX][hapmap]
rs2297061	0.83[CEU][hapmap]
rs854321	0.88[YRI][hapmap]
rs854322	0.88[YRI][hapmap]
rs854329	0.82[CEU][hapmap]
rs854333	0.82[CEU][hapmap]
rs854334	0.82[CEU][hapmap]
rs854342	1.00[MEX][hapmap]
rs898766	0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs854325	OR10G2	cis	cerebellum	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25309000-25328000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:25309800-25324400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:25313800-25323400	Weak transcription	Small Intestine	intestine
4	chr14:25314600-25333600	Weak transcription	Lung	lung
5	chr14:25315600-25330400	Weak transcription	Brain Angular Gyrus	brain
6	chr14:25315800-25324200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:25316000-25330400	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:25318000-25328400	Weak transcription	Right Ventricle	heart
10	chr14:25318200-25330200	Weak transcription	Fetal Heart	heart
11	chr14:25319000-25330400	Weak transcription	Adipose Nuclei	Adipose
12	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
13	chr14:25320000-25326000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:25320000-25330200	Weak transcription	HSMMtube	muscle
15	chr14:25320200-25323400	Enhancers	Fetal Intestine Large	intestine
16	chr14:25320800-25323400	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr14:25320800-25323600	Enhancers	Fetal Intestine Small	intestine
18	chr14:25320800-25323800	Enhancers	Duodenum Mucosa	Duodenum
19	chr14:25320800-25323800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:25320800-25324200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:25321000-25328200	Weak transcription	NH-A	brain
22	chr14:25321200-25325200	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr14:25321400-25330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:25321600-25324000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:25321600-25325400	Strong transcription	HepG2	liver
26	chr14:25321600-25328200	Weak transcription	Brain Anterior Caudate	brain
27	chr14:25321600-25333600	Weak transcription	Fetal Muscle Leg	muscle
28	chr14:25321800-25323400	Weak transcription	HSMM	muscle
29	chr14:25321800-25326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:25321800-25327000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:25322000-25330400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr14:25322400-25326200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:25322600-25323400	Weak transcription	Colonic Mucosa	Colon
34	chr14:25322600-25326200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr14:25322600-25326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:25322600-25326800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:25322600-25328400	Weak transcription	Psoas Muscle	Psoas
38	chr14:25322800-25324400	Strong transcription	Placenta	Placenta
39	chr14:25322800-25326200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:25322800-25326200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr14:25322800-25327200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:25323000-25323400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:25323000-25323600	Genic enhancers	Left Ventricle	heart
44	chr14:25323000-25323600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr14:25323000-25324400	Strong transcription	Stomach Smooth Muscle	stomach
46	chr14:25323000-25324800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:25323000-25326400	Strong transcription	Fetal Lung	lung
48	chr14:25323200-25323600	Genic enhancers	Pancreas	Pancrea

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