Variant report

Variant	rs854329
Chromosome Location	chr14:25327542-25327543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10459539	0.92[CHB][hapmap];0.82[ASN][1000 genomes]
rs10483289	0.83[CEU][hapmap]
rs11158950	0.93[CHB][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs1241587	0.83[CEU][hapmap]
rs1241591	0.82[CEU][hapmap]
rs1241595	0.83[CEU][hapmap]
rs1241596	0.83[CEU][hapmap]
rs1241597	0.83[CEU][hapmap]
rs1241599	0.83[CEU][hapmap]
rs1241600	0.83[CEU][hapmap]
rs1241601	0.83[CEU][hapmap]
rs1241602	0.83[CEU][hapmap]
rs1241604	0.83[CEU][hapmap]
rs1241606	0.87[CEU][hapmap]
rs1241607	0.83[CEU][hapmap]
rs1241611	0.83[CEU][hapmap]
rs1241614	0.84[CEU][hapmap]
rs1241646	0.88[AMR][1000 genomes]
rs12878320	0.91[CEU][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs12879748	0.83[CEU][hapmap]
rs12879796	0.83[CEU][hapmap]
rs12880290	0.82[CEU][hapmap]
rs12880667	0.85[CHB][hapmap]
rs12884685	0.83[CEU][hapmap]
rs12889256	0.83[CEU][hapmap]
rs12889353	0.83[CEU][hapmap]
rs12889497	0.82[CEU][hapmap];0.80[EUR][1000 genomes]
rs12893848	0.80[EUR][1000 genomes]
rs12894268	0.83[CEU][hapmap]
rs12895085	0.83[CEU][hapmap]
rs12895300	0.82[CEU][hapmap]
rs17257465	0.92[CHB][hapmap];0.90[ASN][1000 genomes]
rs1841611	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2297061	0.82[CEU][hapmap]
rs8005503	0.83[CEU][hapmap]
rs854325	0.82[CEU][hapmap]
rs854333	1.00[CEU][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs854334	1.00[CEU][hapmap];0.80[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs854337	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.84[TSI][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs854338	0.87[CEU][hapmap];0.89[AMR][1000 genomes]
rs982467	0.92[CHB][hapmap];0.80[CHD][hapmap];0.84[ASN][1000 genomes]
rs982468	0.92[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs854329	DHRS2	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25309000-25328000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:25314600-25333600	Weak transcription	Lung	lung
3	chr14:25315600-25330400	Weak transcription	Brain Angular Gyrus	brain
4	chr14:25316000-25330400	Weak transcription	Brain Hippocampus Middle	brain
5	chr14:25317800-25344000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:25318000-25328400	Weak transcription	Right Ventricle	heart
7	chr14:25318200-25330200	Weak transcription	Fetal Heart	heart
8	chr14:25319000-25330400	Weak transcription	Adipose Nuclei	Adipose
9	chr14:25319600-25344600	Weak transcription	NHDF-Ad	bronchial
10	chr14:25320000-25330200	Weak transcription	HSMMtube	muscle
11	chr14:25321000-25328200	Weak transcription	NH-A	brain
12	chr14:25321400-25330200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:25321600-25328200	Weak transcription	Brain Anterior Caudate	brain
14	chr14:25321600-25333600	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:25322000-25330400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:25322600-25328400	Weak transcription	Psoas Muscle	Psoas
17	chr14:25323400-25330200	Weak transcription	Fetal Intestine Large	intestine
18	chr14:25323600-25330200	Weak transcription	Fetal Intestine Small	intestine
19	chr14:25323600-25333600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:25324000-25330400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:25324000-25330600	Weak transcription	Pancreas	Pancrea
22	chr14:25324400-25330800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:25324800-25330000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:25325200-25329600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr14:25325400-25330200	Weak transcription	HepG2	liver
26	chr14:25325600-25329600	Weak transcription	HSMM	muscle
27	chr14:25326200-25327600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:25326200-25328000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr14:25326200-25328400	Enhancers	H1 Cell Line	embryonic stem cell
30	chr14:25326200-25328600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:25326200-25328600	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr14:25326400-25327600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr14:25326400-25328200	Weak transcription	Fetal Lung	lung
34	chr14:25326400-25328400	Weak transcription	Right Atrium	heart
35	chr14:25326400-25329000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr14:25326400-25330400	Weak transcription	Stomach Mucosa	stomach
37	chr14:25326400-25343600	Weak transcription	Gastric	stomach
38	chr14:25326600-25330200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:25326800-25327800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr14:25327000-25327600	Enhancers	Left Ventricle	heart
41	chr14:25327000-25329200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr14:25327200-25327800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr14:25327200-25328000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:25327400-25327600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr14:25327400-25328600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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