Variant report

Variant	rs855696
Chromosome Location	chr7:149487019-149487020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149433441..149435598-chr7:149486933..149488751,2	K562	blood:
2	chr7:149467684..149471867-chr7:149482733..149487472,6	K562	blood:
3	chr7:149486170..149487742-chr7:149495791..149498541,2	K562	blood:
4	chr7:149439409..149439997-chr7:149486897..149487877,2	K562	blood:
5	chr7:149359416..149360312-chr7:149486909..149487857,5	K562	blood:
6	chr7:149377419..149380079-chr7:149485808..149488196,2	K562	blood:
7	chr7:149486923..149488789-chr7:149516308..149518311,2	MCF-7	breast:
8	chr7:149484679..149488642-chr7:149489546..149492770,6	MCF-7	breast:
9	chr7:149416557..149419178-chr7:149484233..149488617,3	K562	blood:
10	chr7:149478286..149483291-chr7:149484543..149488292,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197558	Chromatin interaction
ENSG00000133619	Chromatin interaction
ENSG00000181444	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1619502	0.93[AFR][1000 genomes]
rs1620442	0.96[AFR][1000 genomes]
rs1632753	0.81[AFR][1000 genomes]
rs1635802	0.96[AFR][1000 genomes]
rs1635804	0.93[AFR][1000 genomes]
rs1635806	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1635808	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1635809	1.00[AMR][1000 genomes]
rs1659450	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1659455	1.00[AMR][1000 genomes]
rs1659456	1.00[AMR][1000 genomes]
rs2527319	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855677	1.00[AMR][1000 genomes]
rs855678	1.00[AMR][1000 genomes]
rs855681	1.00[AMR][1000 genomes]
rs855687	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855693	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs855695	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893596	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893597	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893599	0.96[AFR][1000 genomes]
rs893600	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893601	0.93[AFR][1000 genomes]
rs893602	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893603	0.96[AFR][1000 genomes]
rs893604	0.96[AFR][1000 genomes]
rs893605	0.82[AFR][1000 genomes]
rs893606	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs893607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv469576	chr7:149379626-149563233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1031581	chr7:149386249-149570178	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv539192	chr7:149386249-149570178	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv831184	chr7:149424835-149600093	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	esv2758139	chr7:149441590-149956415	Strong transcription Active TSS Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	esv2759571	chr7:149441590-149956415	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
11	nsv608981	chr7:149446246-149513152	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv465202	chr7:149450584-149499412	Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv608984	chr7:149450584-149499412	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv889403	chr7:149456359-149509981	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv517242	chr7:149456359-149536214	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv889404	chr7:149458623-149500992	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv889405	chr7:149458623-149500992	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv889406	chr7:149458623-149522366	Flanking Active TSS Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv889407	chr7:149458623-149536214	Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
20	nsv889408	chr7:149458623-149539138	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
21	nsv521861	chr7:149458623-149582906	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
22	nsv889409	chr7:149458623-149585379	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
23	esv1820919	chr7:149459787-149532882	Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
24	nsv889410	chr7:149460447-149500992	Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	esv1816660	chr7:149462712-149529460	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
26	nsv889411	chr7:149465674-149539138	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
27	esv1791871	chr7:149466725-149516442	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
28	nsv889412	chr7:149472508-149536214	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
29	esv1010383	chr7:149475650-149488560	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv981607	chr7:149483488-149506591	Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149473800-149534800	Weak transcription	Right Atrium	heart
2	chr7:149485000-149487200	Weak transcription	Pancreas	Pancrea
3	chr7:149485200-149487200	Enhancers	Liver	Liver
4	chr7:149485200-149487200	Weak transcription	Gastric	stomach
5	chr7:149485200-149489200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:149485400-149487400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:149486200-149487800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr7:149486600-149488200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr7:149486800-149487200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:149486800-149487200	Bivalent Enhancer	Placenta	Placenta
11	chr7:149486800-149487200	Enhancers	A549	lung
12	chr7:149486800-149487400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:149486800-149487400	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr7:149486800-149487400	Bivalent Enhancer	Fetal Stomach	stomach
15	chr7:149486800-149487400	Bivalent Enhancer	Lung	lung
16	chr7:149486800-149487600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr7:149486800-149487800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr7:149487000-149487200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr7:149487000-149487200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
20	chr7:149487000-149487200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
21	chr7:149487000-149487200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:149487000-149487200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
23	chr7:149487000-149487200	Bivalent Enhancer	Fetal Brain Female	brain
24	chr7:149487000-149487200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
25	chr7:149487000-149487200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
26	chr7:149487000-149487200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
27	chr7:149487000-149487400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr7:149487000-149487400	Enhancers	Primary hematopoietic stem cells	blood
29	chr7:149487000-149487400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:149487000-149487400	Bivalent Enhancer	Adipose Nuclei	Adipose
31	chr7:149487000-149487400	Bivalent Enhancer	Brain Germinal Matrix	brain
32	chr7:149487000-149487400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr7:149487000-149487600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr7:149487000-149487600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:149487000-149487600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
36	chr7:149487000-149487600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
37	chr7:149487000-149487600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:149487000-149487600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr7:149487000-149487800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr7:149487000-149487800	Active TSS	H9 Cell Line	embryonic stem cell
41	chr7:149487000-149487800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr7:149487000-149487800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr7:149487000-149487800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
44	chr7:149487000-149487800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:149487000-149488000	Bivalent Enhancer	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links