Variant report

Variant	rs856104
Chromosome Location	chr1:158894077-158894078
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1102018	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2260107	0.92[ASN][1000 genomes]
rs2427820	0.92[ASN][1000 genomes]
rs2427822	0.88[ASN][1000 genomes]
rs2494075	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511204	0.92[ASN][1000 genomes]
rs2518517	0.88[ASN][1000 genomes]
rs2518519	0.88[ASN][1000 genomes]
rs2518534	0.92[ASN][1000 genomes]
rs2518543	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518544	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518545	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518546	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518547	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518548	0.92[ASN][1000 genomes]
rs2518549	0.88[ASN][1000 genomes]
rs2518550	0.92[ASN][1000 genomes]
rs2518551	0.92[ASN][1000 genomes]
rs2518552	0.85[ASN][1000 genomes]
rs2793850	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793852	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793853	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793854	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820126	0.81[EUR][1000 genomes]
rs2820147	0.92[ASN][1000 genomes]
rs2820148	0.92[ASN][1000 genomes]
rs2820149	0.92[ASN][1000 genomes]
rs2820150	0.88[ASN][1000 genomes]
rs2820151	0.88[ASN][1000 genomes]
rs2820152	0.92[ASN][1000 genomes]
rs2820153	0.92[ASN][1000 genomes]
rs2820154	0.92[ASN][1000 genomes]
rs2820156	0.92[ASN][1000 genomes]
rs2820157	0.92[ASN][1000 genomes]
rs2820162	0.92[ASN][1000 genomes]
rs2820167	0.80[ASN][1000 genomes]
rs2820191	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820192	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820194	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820195	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852652	0.88[ASN][1000 genomes]
rs2852662	0.92[ASN][1000 genomes]
rs2852663	0.92[ASN][1000 genomes]
rs2852664	0.92[ASN][1000 genomes]
rs2852665	0.88[ASN][1000 genomes]
rs2852667	0.92[ASN][1000 genomes]
rs2852687	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852688	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852703	0.88[ASN][1000 genomes]
rs2852704	0.88[ASN][1000 genomes]
rs2852711	0.88[ASN][1000 genomes]
rs2852712	0.88[ASN][1000 genomes]
rs4338350	0.92[ASN][1000 genomes]
rs7419186	0.85[ASN][1000 genomes]
rs856096	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856103	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856105	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856107	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856108	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856109	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs856112	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs856114	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856115	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856116	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856117	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856118	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs856119	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs856123	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856151	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860636	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv872484	chr1:158863845-158909164	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv872485	chr1:158863845-158922287	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv946442	chr1:158886760-158899487	ZNF genes & repeats Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158893600-158894200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr1:158893800-158895400	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr1:158893800-158895600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:158894000-158894600	Enhancers	Primary T cells fromperipheralblood	blood

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