Variant report

Variant	rs856151
Chromosome Location	chr1:158886282-158886283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1102018	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2260107	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2427820	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2427822	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2494075	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2511204	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518517	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2518519	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2518534	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518543	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518544	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518545	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518547	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518548	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518549	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2518550	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518551	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518552	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2793850	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793852	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793853	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793854	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820126	0.81[EUR][1000 genomes]
rs2820147	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820148	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820149	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820150	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2820151	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2820152	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820153	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820154	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820156	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820157	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820162	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2820167	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2820191	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820192	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820194	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2820195	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852652	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852662	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852663	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852664	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852665	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852666	0.87[EUR][1000 genomes]
rs2852667	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852687	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852688	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2852703	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852704	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852711	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852712	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2852713	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4338350	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7419186	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs856096	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856103	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856104	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856105	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856107	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856108	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856109	0.86[EUR][1000 genomes]
rs856112	0.87[EUR][1000 genomes]
rs856114	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs856115	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs856116	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs856117	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs856118	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs856119	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs856123	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860636	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1826544	chr1:158833750-158891391	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1830425	chr1:158833750-158891391	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1844046	chr1:158833750-158891391	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv872484	chr1:158863845-158909164	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv872485	chr1:158863845-158922287	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158885400-158886600	Enhancers	HMEC	breast
2	chr1:158885400-158886600	Enhancers	NHEK	skin
3	chr1:158885400-158886800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:158885600-158886400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:158885600-158886600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:158885800-158886600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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