Variant report

Variant	rs858670
Chromosome Location	chr17:45271764-45271765
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1106950	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1476498	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap]
rs1634265	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16941650	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1713493	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs8071243	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs858677	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs858678	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs867859	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs908359	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45266800-45277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:45267200-45275000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:45267200-45277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:45268400-45281000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:45270600-45274800	Weak transcription	HSMM	muscle
6	chr17:45270600-45281200	Weak transcription	Spleen	Spleen
7	chr17:45270800-45274800	Weak transcription	HSMMtube	muscle
8	chr17:45270800-45276800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:45270800-45277200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:45271600-45272200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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