Variant report

Variant	rs867859
Chromosome Location	chr17:45298408-45298409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45297983..45300898-chr17:45329772..45332242,2	K562	blood:

Variant related genes	Relation type
ENSG00000259753	Chromatin interaction
ENSG00000259207	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1106950	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.88[MEX][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1476498	0.95[CEU][hapmap]
rs1634265	0.94[CEU][hapmap]
rs16941650	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1713493	0.95[CEU][hapmap];0.88[MEX][hapmap]
rs8071243	0.94[CEU][hapmap]
rs858670	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs858677	0.95[CEU][hapmap];0.88[MEX][hapmap]
rs858678	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs908359	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45288400-45302000	Weak transcription	HSMM	muscle
2	chr17:45293400-45299000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr17:45293600-45298600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:45293600-45298600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr17:45293600-45298600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr17:45293600-45298800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr17:45293600-45299000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr17:45294000-45298800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:45294000-45299000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:45294000-45299000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:45294000-45299000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr17:45294200-45298600	Enhancers	Primary T cells from cord blood	blood
13	chr17:45294200-45299600	Enhancers	Primary B cells from peripheral blood	blood
14	chr17:45295400-45299200	Enhancers	Primary hematopoietic stem cells	blood
15	chr17:45295600-45301800	Enhancers	Fetal Intestine Small	intestine
16	chr17:45295800-45298800	Genic enhancers	Fetal Muscle Leg	muscle
17	chr17:45295800-45299000	Enhancers	Fetal Thymus	thymus
18	chr17:45295800-45299200	Enhancers	Primary B cells from cord blood	blood
19	chr17:45296200-45298800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:45296200-45299200	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr17:45296200-45299200	Enhancers	Dnd41	blood
22	chr17:45296400-45299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr17:45296400-45304000	Enhancers	Stomach Mucosa	stomach
24	chr17:45296400-45305000	Enhancers	Spleen	Spleen
25	chr17:45296800-45299200	Weak transcription	Small Intestine	intestine
26	chr17:45296800-45300200	Weak transcription	Adipose Nuclei	Adipose
27	chr17:45297200-45299200	Weak transcription	Fetal Intestine Large	intestine
28	chr17:45297200-45300200	Weak transcription	Right Atrium	heart
29	chr17:45297400-45298600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr17:45297400-45298600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr17:45297400-45299000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr17:45297600-45298600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
33	chr17:45297600-45298600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
34	chr17:45297600-45298600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr17:45297600-45298800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr17:45297600-45298800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:45297600-45299000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr17:45297600-45299000	Weak transcription	Left Ventricle	heart
39	chr17:45297800-45298600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr17:45297800-45298800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:45297800-45300800	Enhancers	Duodenum Mucosa	Duodenum
42	chr17:45297800-45302000	Weak transcription	Gastric	stomach
43	chr17:45298000-45298600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr17:45298000-45301200	Strong transcription	HSMMtube	muscle
45	chr17:45298200-45298800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr17:45298200-45300000	Enhancers	Fetal Heart	heart
47	chr17:45298200-45300200	Weak transcription	NHDF-Ad	bronchial
48	chr17:45298200-45300400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr17:45298200-45300400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr17:45298200-45300600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links