Variant report

Variant	rs859461
Chromosome Location	chr1:175415989-175415990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2629481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859378	1.00[AMR][1000 genomes]
rs859385	1.00[AMR][1000 genomes]
rs859394	1.00[AMR][1000 genomes]
rs859409	1.00[AMR][1000 genomes]
rs859411	1.00[AMR][1000 genomes]
rs859412	1.00[AMR][1000 genomes]
rs859416	1.00[AMR][1000 genomes]
rs859418	1.00[AMR][1000 genomes]
rs859464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs863513	1.00[AMR][1000 genomes]
rs863518	1.00[AMR][1000 genomes]
rs865782	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764232	chr1:175387997-175504394	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1792278	chr1:175404515-175429913	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175413600-175417800	Weak transcription	GM12878-XiMat	blood
2	chr1:175414800-175416400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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