Variant report

Variant	rs859465
Chromosome Location	chr1:175411763-175411764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2629481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859378	1.00[AMR][1000 genomes]
rs859385	1.00[AMR][1000 genomes]
rs859394	1.00[AMR][1000 genomes]
rs859409	1.00[AMR][1000 genomes]
rs859411	1.00[AMR][1000 genomes]
rs859412	1.00[AMR][1000 genomes]
rs859416	1.00[AMR][1000 genomes]
rs859418	1.00[AMR][1000 genomes]
rs859461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs859477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs863513	1.00[AMR][1000 genomes]
rs863518	1.00[AMR][1000 genomes]
rs865782	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764232	chr1:175387997-175504394	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524232	chr1:175403509-175411978	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1792278	chr1:175404515-175429913	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3320844	chr1:175411393-175412254	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3320843	chr1:175411464-175412174	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3320845	chr1:175411464-175412174	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv10985	chr1:175411570-175412157	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175400000-175413800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:175411600-175414800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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