Variant report

Variant	rs859554
Chromosome Location	chr7:39041658-39041659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1229026	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1229027	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1229028	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1229029	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs859515	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs859516	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs859518	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs859531	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs859536	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs859539	0.81[CEU][hapmap]
rs859549	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs859550	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs859551	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs859552	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs859553	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3342669	chr7:39039327-39043525	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39040800-39044800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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