Variant report

Variant	rs859549
Chromosome Location	chr7:39044460-39044461
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39010566..39013260-chr7:39044087..39046092,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10224345	1.00[CHB][hapmap]
rs10235824	1.00[CHB][hapmap]
rs10254999	1.00[CHB][hapmap]
rs10269214	1.00[CHB][hapmap]
rs10277485	1.00[CHB][hapmap]
rs10480173	1.00[CHB][hapmap]
rs1229026	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1229029	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1229057	1.00[CHB][hapmap]
rs1405987	1.00[CHB][hapmap]
rs1525790	1.00[CHB][hapmap]
rs1525796	1.00[CHB][hapmap]
rs1527951	1.00[CHB][hapmap]
rs1527953	1.00[CHB][hapmap]
rs1527957	1.00[CHB][hapmap]
rs1534415	1.00[CHB][hapmap]
rs1950001	1.00[CHB][hapmap]
rs2140910	1.00[CHB][hapmap]
rs2893570	1.00[CHB][hapmap]
rs4294102	1.00[CHB][hapmap]
rs4452709	1.00[CHB][hapmap]
rs4499996	1.00[CHB][hapmap]
rs4499997	1.00[CHB][hapmap]
rs4507668	1.00[CHB][hapmap]
rs4720310	1.00[CHB][hapmap]
rs4723826	1.00[CHB][hapmap]
rs6955794	1.00[CHB][hapmap]
rs6971923	1.00[CHB][hapmap]
rs6976988	1.00[CHB][hapmap]
rs702820	1.00[CHB][hapmap]
rs7787883	1.00[CHB][hapmap]
rs859515	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs859516	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs859518	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs859531	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs859536	0.84[AMR][1000 genomes]
rs859550	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs859551	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859553	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs859554	0.83[CEU][hapmap];0.81[AMR][1000 genomes]
rs9987012	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830967	chr7:38913837-39069253	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv887967	chr7:39009307-39090698	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39040800-39044800	Weak transcription	Brain Substantia Nigra	brain
2	chr7:39043800-39046400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:39044000-39044600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:39044200-39045200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:39044400-39044800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:39044400-39044800	Enhancers	Brain Angular Gyrus	brain
7	chr7:39044400-39044800	Enhancers	Fetal Brain Female	brain
8	chr7:39044400-39045000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:39044400-39045000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:39044400-39045200	Enhancers	Pancreas	Pancrea
11	chr7:39044400-39045400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links