Variant report

Variant	rs6971923
Chromosome Location	chr7:39112938-39112939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:39109858..39114276-chr7:39116660..39120717,5	K562	blood:
2	chr7:39112762..39114276-chr7:39117941..39120717,2	K562	blood:
3	chr7:39103596..39105131-chr7:39111658..39114423,2	K562	blood:
4	chr20:13589311..13590026-chr7:39112784..39113357,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10224345	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10234489	0.88[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235824	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10248402	1.00[ASN][1000 genomes]
rs10254999	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10269214	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10480173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs1229057	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1405987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1525790	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525796	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1527951	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap]
rs1527953	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1527957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534415	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881131	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140910	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2893570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294102	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4452709	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4499996	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4499997	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4507668	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4588755	1.00[ASN][1000 genomes]
rs4720310	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs4723826	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723830	1.00[ASN][1000 genomes]
rs6462893	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs6955794	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6976988	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs702820	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73122445	1.00[ASN][1000 genomes]
rs73126431	1.00[ASN][1000 genomes]
rs73126469	1.00[ASN][1000 genomes]
rs7778249	1.00[ASN][1000 genomes]
rs7778299	1.00[ASN][1000 genomes]
rs7787883	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs859513	1.00[ASN][1000 genomes]
rs859542	1.00[ASN][1000 genomes]
rs859545	1.00[ASN][1000 genomes]
rs859546	1.00[ASN][1000 genomes]
rs859549	1.00[CHB][hapmap]
rs859550	1.00[CHB][hapmap]
rs859551	1.00[CHB][hapmap]
rs859552	1.00[CHB][hapmap]
rs859553	1.00[CHB][hapmap]
rs9986786	1.00[ASN][1000 genomes]
rs9987012	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39109600-39113800	Weak transcription	Placenta	Placenta
2	chr7:39111800-39113200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:39111800-39113600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:39112000-39113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:39112000-39113800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:39112200-39113600	Enhancers	Brain Germinal Matrix	brain
7	chr7:39112200-39114400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:39112400-39113400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:39112400-39113400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:39112400-39113600	Enhancers	Brain Cingulate Gyrus	brain
11	chr7:39112400-39113600	Enhancers	Fetal Lung	lung
12	chr7:39112600-39113000	Weak transcription	Fetal Brain Male	brain
13	chr7:39112600-39113400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr7:39112600-39113600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:39112600-39113600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:39112600-39113600	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:39112800-39113000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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