Variant report

Variant	rs10234489
Chromosome Location	chr7:39165537-39165538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10224345	0.89[CEU][hapmap];0.87[MEX][hapmap];1.00[ASN][1000 genomes]
rs10235824	1.00[ASN][1000 genomes]
rs10248402	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254999	0.89[CEU][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs10269214	0.95[CEU][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277485	1.00[ASN][1000 genomes]
rs10480173	0.89[CEU][hapmap]
rs1229057	1.00[ASN][1000 genomes]
rs1405987	1.00[ASN][1000 genomes]
rs1525790	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525796	0.95[CEU][hapmap]
rs1527953	1.00[ASN][1000 genomes]
rs1527957	0.89[CEU][hapmap];0.89[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534415	0.89[CEU][hapmap];0.89[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881131	0.89[CEU][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950001	0.89[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140910	1.00[ASN][1000 genomes]
rs2893570	0.94[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294102	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs4452709	1.00[ASN][1000 genomes]
rs4499996	1.00[ASN][1000 genomes]
rs4499997	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs4507668	0.89[CEU][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs4588755	1.00[ASN][1000 genomes]
rs4720310	0.94[CEU][hapmap]
rs4723826	0.95[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723830	1.00[ASN][1000 genomes]
rs6462893	0.89[CEU][hapmap]
rs6955794	0.89[CEU][hapmap];0.87[MEX][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs6971923	0.88[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976988	0.95[CEU][hapmap]
rs702820	1.00[ASN][1000 genomes]
rs73121830	1.00[ASN][1000 genomes]
rs73122445	1.00[ASN][1000 genomes]
rs73126431	1.00[ASN][1000 genomes]
rs73126469	1.00[ASN][1000 genomes]
rs7778249	1.00[ASN][1000 genomes]
rs7778299	1.00[ASN][1000 genomes]
rs7787883	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs7794776	0.85[EUR][1000 genomes]
rs859513	1.00[ASN][1000 genomes]
rs859542	1.00[ASN][1000 genomes]
rs859545	1.00[ASN][1000 genomes]
rs859546	1.00[ASN][1000 genomes]
rs9986786	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9987012	0.84[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887968	chr7:39123165-39198960	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39153200-39165800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:39164200-39166200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:39164600-39165800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:39165400-39166000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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