Variant report

Variant	rs10480173
Chromosome Location	chr7:39106850-39106851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39100776..39102763-chr7:39104623..39107259,2	K562	blood:
2	chr7:39106470..39108437-chr7:39109881..39112048,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10224345	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10234489	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs10235824	1.00[CHB][hapmap]
rs10254999	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs10269214	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs10277485	1.00[CHB][hapmap]
rs1229057	1.00[CHB][hapmap]
rs1405987	1.00[CHB][hapmap]
rs1525790	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1525796	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs1527951	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1527953	1.00[CHB][hapmap]
rs1527957	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1534415	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1881131	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1950001	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2140910	1.00[CHB][hapmap]
rs2893570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4294102	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4452709	1.00[CHB][hapmap]
rs4499996	1.00[CHB][hapmap]
rs4499997	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs4507668	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs4720310	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4723826	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs6462893	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6955794	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs6971923	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976988	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs702820	1.00[CHB][hapmap]
rs7787883	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs859549	1.00[CHB][hapmap]
rs859550	1.00[CHB][hapmap]
rs859551	1.00[CHB][hapmap]
rs859552	1.00[CHB][hapmap]
rs859553	1.00[CHB][hapmap]
rs9987012	0.94[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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