Variant report

Variant	rs6462893
Chromosome Location	chr7:39103949-39103950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39059555..39062037-chr7:39102548..39105141,2	K562	blood:
2	chr7:39103596..39105131-chr7:39111658..39114423,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10224345	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs10234489	0.89[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235824	1.00[ASN][1000 genomes]
rs10248402	1.00[ASN][1000 genomes]
rs10254999	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs10269214	0.94[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277485	1.00[ASN][1000 genomes]
rs10480173	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1229057	1.00[ASN][1000 genomes]
rs1405987	1.00[ASN][1000 genomes]
rs1525790	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1525796	0.94[CEU][hapmap]
rs1527951	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs1527953	1.00[ASN][1000 genomes]
rs1527957	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1534415	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1881131	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950001	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2140910	1.00[ASN][1000 genomes]
rs2893570	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4294102	0.94[CEU][hapmap];1.00[ASN][1000 genomes]
rs4452709	1.00[ASN][1000 genomes]
rs4499996	1.00[ASN][1000 genomes]
rs4499997	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs4507668	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs4588755	1.00[ASN][1000 genomes]
rs4720310	0.94[CEU][hapmap]
rs4723826	0.94[CEU][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723830	1.00[ASN][1000 genomes]
rs6955794	0.89[CEU][hapmap];1.00[ASN][1000 genomes]
rs6971923	1.00[CEU][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976988	0.94[CEU][hapmap]
rs702820	1.00[ASN][1000 genomes]
rs73122445	1.00[ASN][1000 genomes]
rs73126431	1.00[ASN][1000 genomes]
rs73126469	1.00[ASN][1000 genomes]
rs7778249	1.00[ASN][1000 genomes]
rs7778299	1.00[ASN][1000 genomes]
rs7787883	0.90[CEU][hapmap];1.00[ASN][1000 genomes]
rs859513	1.00[ASN][1000 genomes]
rs859542	1.00[ASN][1000 genomes]
rs859545	1.00[ASN][1000 genomes]
rs859546	1.00[ASN][1000 genomes]
rs9986786	1.00[ASN][1000 genomes]
rs9987012	0.94[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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