Variant report

Variant	rs10248402
Chromosome Location	chr7:39223196-39223197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10224345	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234489	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235824	1.00[ASN][1000 genomes]
rs10250849	0.92[EUR][1000 genomes]
rs10254999	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269214	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10277485	1.00[ASN][1000 genomes]
rs1229057	1.00[ASN][1000 genomes]
rs1405987	1.00[ASN][1000 genomes]
rs1525790	1.00[ASN][1000 genomes]
rs1527953	1.00[ASN][1000 genomes]
rs1527957	1.00[ASN][1000 genomes]
rs1534415	1.00[ASN][1000 genomes]
rs1881131	1.00[ASN][1000 genomes]
rs1950001	1.00[ASN][1000 genomes]
rs2140910	1.00[ASN][1000 genomes]
rs2893570	1.00[ASN][1000 genomes]
rs4294102	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4452709	1.00[ASN][1000 genomes]
rs4499996	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499997	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507668	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4588755	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723826	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4723830	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955794	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971923	1.00[ASN][1000 genomes]
rs702820	1.00[ASN][1000 genomes]
rs73121830	1.00[ASN][1000 genomes]
rs73122445	1.00[ASN][1000 genomes]
rs73126431	1.00[ASN][1000 genomes]
rs73126469	1.00[ASN][1000 genomes]
rs7778249	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778299	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787883	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs859513	1.00[ASN][1000 genomes]
rs859542	1.00[ASN][1000 genomes]
rs859545	1.00[ASN][1000 genomes]
rs859546	1.00[ASN][1000 genomes]
rs9986786	1.00[ASN][1000 genomes]
rs9987012	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830968	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv428163	chr7:39127531-39283543	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39215000-39247000	Weak transcription	Pancreas	Pancrea
2	chr7:39219200-39226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:39222800-39225800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:39222800-39225800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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