Variant report

Variant	rs859660
Chromosome Location	chr1:172644703-172644704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172643682..172645503-chr1:172649687..172652522,2	MCF-7	breast:
2	chr1:172501962..172503556-chr1:172642987..172644928,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

rs_ID	r²[population]
rs859661	1.00[YRI][hapmap]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172639000-172645800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:172639200-172646200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:172639200-172647000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:172639800-172645600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr1:172639800-172646400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr1:172640400-172647600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:172641000-172646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:172641200-172646000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:172641200-172646200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:172641200-172652000	Weak transcription	Gastric	stomach
11	chr1:172641600-172649800	Weak transcription	HSMMtube	muscle
12	chr1:172643000-172645000	Enhancers	Osteobl	bone
13	chr1:172643000-172645600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:172643600-172644800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:172643600-172645200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:172643600-172645400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr1:172643800-172645000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:172643800-172645600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:172644000-172644800	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr1:172644000-172644800	Enhancers	Thymus	Thymus
21	chr1:172644000-172645000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:172644000-172645000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr1:172644000-172645000	Bivalent Enhancer	Fetal Thymus	thymus
24	chr1:172644000-172645000	Flanking Active TSS	Dnd41	blood
25	chr1:172644000-172645200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:172644000-172645200	Enhancers	NHEK	skin
27	chr1:172644000-172647200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr1:172644200-172644800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr1:172644200-172645000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr1:172644200-172645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:172644200-172645400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:172644400-172645000	Enhancers	HMEC	breast
33	chr1:172644600-172645000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:172644600-172645800	Enhancers	Primary T cells from cord blood	blood

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