Variant report

Variant	rs859661
Chromosome Location	chr1:172643152-172643153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172501962..172503556-chr1:172642987..172644928,2	K562	blood:
2	chr1:172637748..172639981-chr1:172640756..172643256,3	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

rs_ID	r²[population]
rs859660	1.00[YRI][hapmap]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172639000-172644200	Enhancers	Primary T cells from cord blood	blood
2	chr1:172639000-172645800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:172639200-172646200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr1:172639200-172647000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:172639800-172645600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:172639800-172646400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:172640400-172644200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:172640400-172647600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:172640800-172644000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:172640800-172644000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:172641000-172643800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:172641000-172644000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172641000-172646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:172641200-172644200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr1:172641200-172644200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:172641200-172646000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr1:172641200-172646200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:172641200-172652000	Weak transcription	Gastric	stomach
19	chr1:172641400-172644200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:172641600-172649800	Weak transcription	HSMMtube	muscle
21	chr1:172641800-172644400	Weak transcription	HMEC	breast
22	chr1:172641800-172644600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:172642200-172643600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:172642200-172643600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:172642200-172644000	Weak transcription	NHEK	skin
26	chr1:172642400-172643800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:172643000-172643600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr1:172643000-172644000	Enhancers	Dnd41	blood
29	chr1:172643000-172645000	Enhancers	Osteobl	bone
30	chr1:172643000-172645600	Enhancers	Placenta Amnion	Placenta Amnion

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