Variant report

Variant	rs863815
Chromosome Location	chr6:36394171-36394172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36388375..36397373-chr6:36559893..36568556,25	K562	blood:
2	chr6:36389566..36392929-chr6:36393759..36397072,6	K562	blood:
3	chr6:36388047..36404187-chr6:36407090..36418492,47	K562	blood:
4	chr6:36392379..36394477-chr6:36445111..36447901,2	K562	blood:
5	chr6:36393812..36400727-chr6:36401208..36405433,7	K562	blood:
6	chr6:36389826..36395258-chr6:36409228..36414565,11	MCF-7	breast:
7	chr6:36388539..36397962-chr6:36560062..36566089,23	K562	blood:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1003250	0.83[ASN][1000 genomes]
rs10440841	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12209346	0.81[ASN][1000 genomes]
rs12214285	0.83[ASN][1000 genomes]
rs12215889	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1570368	0.80[ASN][1000 genomes]
rs1742757	0.83[AMR][1000 genomes]
rs1744654	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711450	0.82[ASN][1000 genomes]
rs4711453	0.80[ASN][1000 genomes]
rs515129	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs515186	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs517890	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs522179	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs544267	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs546272	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs546353	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs547026	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs547966	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs566742	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57389119	0.80[ASN][1000 genomes]
rs584196	0.83[ASN][1000 genomes]
rs584418	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59440875	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs595954	0.82[ASN][1000 genomes]
rs597153	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs600192	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs621796	0.80[ASN][1000 genomes]
rs628314	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs629297	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs629721	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs632943	0.80[ASN][1000 genomes]
rs6457918	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs659726	0.80[ASN][1000 genomes]
rs664370	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6923993	0.83[ASN][1000 genomes]
rs73411054	0.80[ASN][1000 genomes]
rs7744363	0.82[ASN][1000 genomes]
rs853881	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs853882	0.83[ASN][1000 genomes]
rs9357214	0.83[ASN][1000 genomes]
rs9470274	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9470278	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs863815	ETV7	cis	Whole Blood	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36391800-36395400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:36391800-36395400	Weak transcription	HSMM	muscle
3	chr6:36391800-36395600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:36391800-36395600	Weak transcription	HSMMtube	muscle
5	chr6:36391800-36397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:36392000-36394200	Weak transcription	K562	blood
7	chr6:36392000-36394400	Weak transcription	Hela-S3	cervix
8	chr6:36392000-36395200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:36392000-36395200	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:36392000-36395600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:36392000-36395600	Weak transcription	A549	lung
12	chr6:36392000-36398800	Weak transcription	Osteobl	bone
13	chr6:36392000-36399200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:36392000-36400000	Weak transcription	Fetal Heart	heart
15	chr6:36392000-36404200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:36392400-36396800	Weak transcription	Placenta	Placenta
17	chr6:36393200-36394200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:36393600-36394200	Enhancers	HMEC	breast
19	chr6:36393600-36394200	Enhancers	NHEK	skin
20	chr6:36393800-36394200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:36393800-36399600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:36394000-36395000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links