Variant report

Variant	rs853881
Chromosome Location	chr6:36447611-36447612
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36409675..36412531-chr6:36445398..36447987,2	MCF-7	breast:
2	chr6:36444756..36446407-chr6:36447308..36449402,2	K562	blood:
3	chr6:36445569..36447904-chr6:36454097..36457090,2	K562	blood:
4	chr6:36392379..36394477-chr6:36445111..36447901,2	K562	blood:
5	chr6:36443244..36450154-chr6:36560815..36564510,7	K562	blood:
6	chr6:36446487..36448077-chr6:36452872..36455429,2	K562	blood:
7	chr6:36407760..36411032-chr6:36443705..36447898,5	K562	blood:
8	chr6:36409140..36410853-chr6:36445957..36447898,2	K562	blood:
9	chr6:36438735..36444025-chr6:36445712..36451079,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1003250	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10440841	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10947609	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12209346	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12214285	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215889	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1233080	0.87[AMR][1000 genomes]
rs1570368	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1742757	0.81[ASN][1000 genomes]
rs1744654	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3752478	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3798471	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4140593	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711450	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711452	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4711453	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs515129	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs515186	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs517890	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs522179	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs544267	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs546272	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs546353	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs547026	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547966	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs566742	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57389119	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs584196	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584418	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59440875	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs595954	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs597153	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs600192	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs605684	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs609067	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs614028	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs619011	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs621796	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs628213	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs628314	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629297	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629560	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629721	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs632943	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457918	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs659726	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs664370	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6923993	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941918	0.81[ASN][1000 genomes]
rs73411054	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7744363	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs853873	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs853882	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs860513	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs863815	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9296184	0.84[EUR][1000 genomes]
rs9357214	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470274	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470278	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470285	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470309	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs853881	ETV7	cis	Whole Blood	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36411600-36476400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:36412200-36449200	Weak transcription	Esophagus	oesophagus
3	chr6:36412600-36449000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:36412800-36448600	Weak transcription	HMEC	breast
5	chr6:36419000-36449200	Weak transcription	Pancreas	Pancrea
6	chr6:36423000-36449400	Weak transcription	Gastric	stomach
7	chr6:36423400-36449600	Weak transcription	Stomach Mucosa	stomach
8	chr6:36427600-36449200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:36428800-36456600	Weak transcription	Right Atrium	heart
10	chr6:36429800-36449200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:36430800-36488800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:36431200-36453600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:36431600-36449000	Weak transcription	Small Intestine	intestine
14	chr6:36431600-36449200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:36431800-36449000	Weak transcription	A549	lung
16	chr6:36432400-36449000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:36432400-36449200	Weak transcription	NHDF-Ad	bronchial
18	chr6:36433800-36449200	Weak transcription	NHLF	lung
19	chr6:36436400-36448800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:36436800-36452400	Weak transcription	Fetal Brain Male	brain
21	chr6:36437000-36450400	Strong transcription	Dnd41	blood
22	chr6:36437200-36449400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:36437200-36455600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:36437200-36461400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:36437800-36450400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:36437800-36450600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:36437800-36455400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:36437800-36468000	Strong transcription	Fetal Muscle Leg	muscle
29	chr6:36437800-36477600	Strong transcription	Fetal Thymus	thymus
30	chr6:36438000-36449200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr6:36438000-36455200	Strong transcription	Osteobl	bone
32	chr6:36438000-36461000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:36439600-36448000	Weak transcription	Ovary	ovary
34	chr6:36439600-36448400	Weak transcription	Brain Hippocampus Middle	brain
35	chr6:36439600-36449200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:36439800-36449000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:36440200-36449000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:36440200-36449000	Weak transcription	Spleen	Spleen
39	chr6:36440200-36453400	Weak transcription	Psoas Muscle	Psoas
40	chr6:36440400-36448400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:36440400-36448800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:36440400-36449000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:36440600-36447800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:36440600-36448800	Weak transcription	Brain Anterior Caudate	brain
45	chr6:36440600-36449200	Weak transcription	Colonic Mucosa	Colon
46	chr6:36440800-36448000	Weak transcription	Brain Germinal Matrix	brain
47	chr6:36442000-36450400	Strong transcription	Fetal Lung	lung
48	chr6:36442000-36459000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:36442200-36450400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:36442200-36460200	Strong transcription	Fetal Muscle Trunk	muscle

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