Variant report

Variant	rs6941918
Chromosome Location	chr6:36514721-36514722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
2	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
3	chr6:36408851..36410684-chr6:36512554..36515336,3	K562	blood:
4	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
5	chr6:36409184..36410963-chr6:36513836..36516900,3	K562	blood:
6	chr6:36513256..36514925-chr6:36570218..36572859,3	K562	blood:
7	chr6:36513370..36515088-chr6:36555840..36557941,2	MCF-7	breast:
8	chr6:36389979..36392367-chr6:36513039..36514826,2	MCF-7	breast:
9	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
10	chr6:36409344..36412329-chr6:36513269..36516052,4	MCF-7	breast:
11	chr6:36514101..36515020-chr6:36561370..36562194,2	Hela-S3	cervix:
12	chr6:36513256..36515069-chr6:36571359..36573828,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112078	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1003250	0.81[ASN][1000 genomes]
rs10947609	0.88[ASN][1000 genomes]
rs12209346	0.82[ASN][1000 genomes]
rs12214285	0.81[ASN][1000 genomes]
rs1570368	0.84[ASN][1000 genomes]
rs3752478	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3798471	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4140593	0.86[ASN][1000 genomes]
rs4711450	0.81[ASN][1000 genomes]
rs4711452	0.83[ASN][1000 genomes]
rs4711453	0.84[ASN][1000 genomes]
rs57389119	0.84[ASN][1000 genomes]
rs584196	0.81[ASN][1000 genomes]
rs595954	0.82[ASN][1000 genomes]
rs609067	0.87[ASN][1000 genomes]
rs614028	0.85[ASN][1000 genomes]
rs619011	0.84[ASN][1000 genomes]
rs621796	0.83[ASN][1000 genomes]
rs628213	0.89[ASN][1000 genomes]
rs629560	0.89[ASN][1000 genomes]
rs632943	0.83[ASN][1000 genomes]
rs659726	0.83[ASN][1000 genomes]
rs6923993	0.81[ASN][1000 genomes]
rs73411054	0.84[ASN][1000 genomes]
rs7744363	0.80[ASN][1000 genomes]
rs853873	0.84[ASN][1000 genomes]
rs853881	0.81[ASN][1000 genomes]
rs853882	0.81[ASN][1000 genomes]
rs860513	0.87[ASN][1000 genomes]
rs9357214	0.81[ASN][1000 genomes]
rs9470309	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
2	nsv5260	chr6:36471464-36516119	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36511600-36514800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:36512600-36515400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:36512600-36515600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:36512800-36515200	Active TSS	Primary T cells from cord blood	blood
5	chr6:36512800-36515400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:36512800-36515400	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr6:36512800-36515400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
8	chr6:36512800-36515400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr6:36512800-36515400	Active TSS	NHLF	lung
10	chr6:36512800-36515600	Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr6:36513000-36514800	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:36513000-36515400	Active TSS	Primary T cells fromperipheralblood	blood
13	chr6:36513000-36515400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:36513000-36515600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:36513200-36515400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:36513200-36515400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:36513200-36515400	Active TSS	GM12878-XiMat	blood
18	chr6:36513400-36514800	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr6:36513400-36514800	Flanking Active TSS	Liver	Liver
20	chr6:36513400-36515400	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr6:36513400-36515400	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:36513400-36515400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:36513400-36515400	Active TSS	Psoas Muscle	Psoas
24	chr6:36513400-36515400	Active TSS	Right Ventricle	heart
25	chr6:36513400-36515400	Active TSS	HSMM	muscle
26	chr6:36513400-36515600	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr6:36513400-36515600	Active TSS	Fetal Brain Female	brain
28	chr6:36513400-36515600	Active TSS	Right Atrium	heart
29	chr6:36513400-36515600	Active TSS	Stomach Smooth Muscle	stomach
30	chr6:36513400-36515800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:36513600-36515200	Active TSS	Primary monocytes fromperipheralblood	blood
32	chr6:36513600-36515400	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:36513600-36515400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr6:36513600-36515400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:36513600-36515400	Active TSS	Fetal Intestine Large	intestine
36	chr6:36513600-36515400	Active TSS	Fetal Thymus	thymus
37	chr6:36513600-36515400	Active TSS	HSMMtube	muscle
38	chr6:36513600-36515400	Active TSS	Monocytes-CD14+_RO01746	blood
39	chr6:36513600-36515600	Active TSS	H1 Cell Line	embryonic stem cell
40	chr6:36513600-36515600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:36513600-36515600	Active TSS	Colonic Mucosa	Colon
42	chr6:36513600-36515600	Active TSS	Fetal Muscle Leg	muscle
43	chr6:36513600-36515800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:36513800-36514800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
45	chr6:36513800-36515200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:36513800-36515200	Active TSS	Placenta	Placenta
47	chr6:36513800-36515200	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr6:36513800-36515400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:36513800-36515400	Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:36513800-36515400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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