Variant report

Variant	rs867402
Chromosome Location	chr14:69758262-69758263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69756100..69758625-chr14:69764352..69766435,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100626	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10459533	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10459534	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10498529	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12432470	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12432549	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12433032	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12433349	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12434956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12435957	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12436823	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12437400	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12589585	0.87[MEX][hapmap]
rs12881742	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1563295	0.82[ASW][hapmap];0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs17106899	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2185494	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2331960	0.84[AMR][1000 genomes]
rs4902710	0.97[ASN][1000 genomes]
rs8008082	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8011772	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs956134	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69735800-69771600	Weak transcription	Fetal Intestine Small	intestine
2	chr14:69750200-69760600	Weak transcription	Pancreas	Pancrea
3	chr14:69753600-69759400	Enhancers	NHDF-Ad	bronchial
4	chr14:69753800-69759400	Enhancers	Fetal Muscle Trunk	muscle
5	chr14:69753800-69759400	Enhancers	Fetal Muscle Leg	muscle
6	chr14:69754000-69758800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr14:69754200-69759400	Enhancers	Left Ventricle	heart
8	chr14:69754800-69758600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69755000-69758800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:69755200-69758400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:69755200-69758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:69755400-69758800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr14:69756200-69758600	Enhancers	Adipose Nuclei	Adipose
14	chr14:69756200-69759400	Enhancers	Right Ventricle	heart
15	chr14:69756200-69759400	Enhancers	Spleen	Spleen
16	chr14:69757000-69758800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:69757600-69758600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:69758000-69758400	Enhancers	Fetal Heart	heart
19	chr14:69758200-69758400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:69758200-69758400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr14:69758200-69758400	Flanking Active TSS	HepG2	liver
22	chr14:69758200-69758800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:69758200-69758800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
24	chr14:69758200-69758800	Enhancers	HSMMtube	muscle
25	chr14:69758200-69759000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:69758200-69759000	Enhancers	Ovary	ovary
27	chr14:69758200-69759200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:69758200-69759200	Enhancers	Right Atrium	heart
29	chr14:69758200-69759200	Enhancers	HSMM	muscle

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