Variant report

Variant	rs867847
Chromosome Location	chr1:211302394-211302395
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12568832	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12749443	0.92[ASN][1000 genomes]
rs12758791	0.93[ASN][1000 genomes]
rs1338348	1.00[ASW][hapmap]
rs17017172	1.00[ASW][hapmap]
rs17017239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185069	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34210258	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs35505648	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35835736	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3811394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4347267	0.89[CHD][hapmap];0.89[JPT][hapmap];1.00[MKK][hapmap]
rs4951720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4951725	0.95[ASN][1000 genomes]
rs4951727	0.92[ASN][1000 genomes]
rs867848	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs867847	RPS6KC1	cis	parietal	SCAN
rs867847	FAIM3	cis	parietal	SCAN
rs867847	FCAMR	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211292800-211305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:211297800-211305400	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:211300600-211303200	Weak transcription	HSMMtube	muscle
4	chr1:211301000-211306000	Weak transcription	A549	lung
5	chr1:211301200-211302600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:211301200-211304000	Weak transcription	Brain Anterior Caudate	brain
7	chr1:211301200-211305400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:211301200-211306000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:211301400-211302600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:211301400-211303800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:211301400-211305200	Weak transcription	HSMM	muscle
12	chr1:211302000-211302600	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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