Variant report

Variant	rs868096
Chromosome Location	chr19:37835250-37835251
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1016291	0.84[ASN][1000 genomes]
rs11666602	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11667853	0.96[ASN][1000 genomes]
rs11672033	0.96[ASN][1000 genomes]
rs16973130	1.00[JPT][hapmap]
rs16973541	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs16974848	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2216690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs34169829	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34809375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4452074	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs61741499	0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7259638	0.96[ASN][1000 genomes]
rs8106641	0.96[ASN][1000 genomes]
rs8112900	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826200-37853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37826400-37837800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:37826400-37838200	Weak transcription	HUVEC	blood vessel
4	chr19:37826600-37835600	Weak transcription	Osteobl	bone
5	chr19:37826600-37838000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr19:37826600-37848800	Weak transcription	Small Intestine	intestine
7	chr19:37826600-37856200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr19:37826800-37836200	Weak transcription	Gastric	stomach
10	chr19:37826800-37838000	Weak transcription	Psoas Muscle	Psoas
11	chr19:37826800-37846600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:37826800-37847000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr19:37826800-37852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:37826800-37853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr19:37827000-37835400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:37827000-37837000	Weak transcription	Colon Smooth Muscle	Colon
17	chr19:37827000-37837000	Weak transcription	NHLF	lung
18	chr19:37827000-37838000	Weak transcription	Pancreas	Pancrea
19	chr19:37827000-37838400	Weak transcription	Hela-S3	cervix
20	chr19:37827000-37845800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr19:37827000-37853400	Weak transcription	Stomach Mucosa	stomach
22	chr19:37827200-37837200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr19:37827200-37838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr19:37828000-37855800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr19:37828200-37838200	Weak transcription	Fetal Brain Male	brain
26	chr19:37828400-37838000	Weak transcription	Right Atrium	heart
27	chr19:37830000-37835800	Weak transcription	Brain Substantia Nigra	brain
28	chr19:37830000-37846800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr19:37830000-37853600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr19:37830800-37853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr19:37831200-37836400	ZNF genes & repeats	A549	lung
32	chr19:37831800-37840400	Strong transcription	Ovary	ovary
33	chr19:37831800-37840600	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr19:37831800-37842000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr19:37831800-37846400	Strong transcription	Dnd41	blood
36	chr19:37832000-37842000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr19:37832200-37840600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:37832200-37840800	Strong transcription	Primary T cells from cord blood	blood
39	chr19:37832200-37842000	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:37832400-37836000	Weak transcription	Fetal Heart	heart
41	chr19:37832600-37835600	Weak transcription	NHDF-Ad	bronchial
42	chr19:37832600-37838800	Weak transcription	HepG2	liver
43	chr19:37832600-37843200	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr19:37832600-37852200	Weak transcription	Fetal Thymus	thymus
45	chr19:37832800-37850800	Weak transcription	HMEC	breast
46	chr19:37832800-37852400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr19:37833000-37835600	Weak transcription	NH-A	brain
48	chr19:37833000-37837000	Weak transcription	Brain Germinal Matrix	brain
49	chr19:37833000-37838800	Weak transcription	NHEK	skin
50	chr19:37833000-37845400	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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