Variant report

Variant	rs7259638
Chromosome Location	chr19:37812144-37812145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37811089..37813216-chr19:37824078..37826922,2	MCF-7	breast:
2	chr19:37807596..37810287-chr19:37811527..37815374,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181666	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1016291	0.81[ASN][1000 genomes]
rs11666602	0.96[ASN][1000 genomes]
rs11666699	1.00[EUR][1000 genomes]
rs11667853	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11671732	1.00[EUR][1000 genomes]
rs11672033	1.00[ASN][1000 genomes]
rs11672330	1.00[EUR][1000 genomes]
rs16974848	0.96[ASN][1000 genomes]
rs2216690	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34169829	0.96[ASN][1000 genomes]
rs34809375	0.96[ASN][1000 genomes]
rs35895160	1.00[EUR][1000 genomes]
rs56822639	1.00[EUR][1000 genomes]
rs61741499	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106641	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8112900	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs868096	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37809200-37815800	Weak transcription	Gastric	stomach
2	chr19:37809200-37815800	Weak transcription	Spleen	Spleen
3	chr19:37809200-37818800	Weak transcription	Esophagus	oesophagus
4	chr19:37809200-37824800	Weak transcription	Stomach Mucosa	stomach
5	chr19:37809400-37814400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr19:37809400-37814400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr19:37809400-37815800	Weak transcription	Aorta	Aorta
8	chr19:37809400-37825000	Weak transcription	Fetal Thymus	thymus
9	chr19:37809400-37825000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:37809600-37812600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr19:37809600-37813200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr19:37809600-37813400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr19:37809600-37815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:37809600-37816000	Weak transcription	Psoas Muscle	Psoas
15	chr19:37809600-37819200	Weak transcription	Brain Substantia Nigra	brain
16	chr19:37809600-37819400	Weak transcription	Pancreas	Pancrea
17	chr19:37809600-37824400	Weak transcription	NHDF-Ad	bronchial
18	chr19:37809600-37825000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr19:37809800-37812200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:37809800-37813600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr19:37809800-37813800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr19:37809800-37813800	Weak transcription	Fetal Intestine Large	intestine
23	chr19:37809800-37814400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr19:37809800-37814600	Weak transcription	Placenta	Placenta
25	chr19:37809800-37815800	Weak transcription	Thymus	Thymus
26	chr19:37809800-37816600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr19:37809800-37818400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:37809800-37820000	Weak transcription	HMEC	breast
29	chr19:37810000-37813200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr19:37810000-37814200	Weak transcription	Ovary	ovary
31	chr19:37810000-37814400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr19:37810000-37814400	Weak transcription	Osteobl	bone
33	chr19:37810000-37814600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr19:37810000-37814600	Weak transcription	HSMMtube	muscle
35	chr19:37810000-37818400	Weak transcription	HUVEC	blood vessel
36	chr19:37810000-37819000	Weak transcription	Fetal Brain Female	brain
37	chr19:37810000-37819400	Weak transcription	Brain Germinal Matrix	brain
38	chr19:37810000-37819400	Weak transcription	NHEK	skin
39	chr19:37810000-37820000	Weak transcription	NHLF	lung
40	chr19:37810000-37825000	Weak transcription	Hela-S3	cervix
41	chr19:37810200-37813200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:37810200-37813400	Weak transcription	Primary T cells from cord blood	blood
43	chr19:37810200-37813400	Weak transcription	Fetal Muscle Leg	muscle
44	chr19:37810200-37813800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr19:37810200-37814600	Weak transcription	Right Atrium	heart
46	chr19:37810200-37815800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr19:37810200-37821800	ZNF genes & repeats	A549	lung
48	chr19:37810400-37812600	Genic enhancers	Primary T cells fromperipheralblood	blood
49	chr19:37810400-37813800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr19:37810400-37818400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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