Variant report

Variant	rs11672330
Chromosome Location	chr19:37796891-37796892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11666138	1.00[AMR][1000 genomes]
rs11666699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667497	1.00[ASN][1000 genomes]
rs11667866	1.00[ASN][1000 genomes]
rs11668217	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11668546	1.00[AMR][1000 genomes]
rs11669502	1.00[ASN][1000 genomes]
rs11670245	1.00[YRI][hapmap]
rs11671057	1.00[ASN][1000 genomes]
rs11671358	1.00[ASN][1000 genomes]
rs11671510	1.00[ASN][1000 genomes]
rs11671732	1.00[EUR][1000 genomes]
rs11672064	1.00[ASN][1000 genomes]
rs16973488	1.00[ASN][1000 genomes]
rs1915489	1.00[YRI][hapmap]
rs2216690	1.00[YRI][hapmap]
rs35895160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4483965	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs56822639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6508730	1.00[ASN][1000 genomes]
rs6508731	1.00[ASN][1000 genomes]
rs7245717	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7246762	1.00[ASN][1000 genomes]
rs7257174	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs7259638	1.00[EUR][1000 genomes]
rs8103087	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs8104809	1.00[ASN][1000 genomes]
rs8108658	1.00[ASN][1000 genomes]
rs8108739	1.00[GIH][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3520361	chr19:37745067-37811325	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3520362	chr19:37745067-37811325	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv978811	chr19:37749967-37820517	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37794400-37797200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr19:37794400-37797200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
3	chr19:37794400-37797400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr19:37794400-37798400	ZNF genes & repeats	Fetal Brain Female	brain
5	chr19:37796000-37801000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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