Variant report

Variant	rs11671510
Chromosome Location	chr19:37929782-37929783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11666699	1.00[ASN][1000 genomes]
rs11667497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667866	1.00[ASN][1000 genomes]
rs11668217	1.00[ASN][1000 genomes]
rs11669502	1.00[ASN][1000 genomes]
rs11671057	1.00[ASN][1000 genomes]
rs11671358	1.00[ASN][1000 genomes]
rs11672064	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11672330	1.00[ASN][1000 genomes]
rs16973488	1.00[ASN][1000 genomes]
rs35895160	1.00[ASN][1000 genomes]
rs56822639	1.00[ASN][1000 genomes]
rs6508730	1.00[ASN][1000 genomes]
rs6508731	1.00[ASN][1000 genomes]
rs7245717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7246762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7257174	1.00[ASN][1000 genomes]
rs7259754	0.81[AFR][1000 genomes]
rs8103087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8104809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108658	1.00[ASN][1000 genomes]
rs8108739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
4	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:37924400-37932800	Weak transcription	Osteobl	bone
10	chr19:37925000-37930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr19:37925000-37943400	Weak transcription	HSMM	muscle
12	chr19:37925400-37931800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:37927000-37930200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr19:37927000-37930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr19:37927600-37936600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:37927800-37936200	ZNF genes & repeats	Dnd41	blood
17	chr19:37927800-37936400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:37927800-37936600	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr19:37927800-37937200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
20	chr19:37928000-37934000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
21	chr19:37928000-37936200	ZNF genes & repeats	Brain Germinal Matrix	brain
22	chr19:37928000-37936400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:37928000-37937000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr19:37928200-37933800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr19:37928400-37936600	ZNF genes & repeats	Brain Hippocampus Middle	brain
26	chr19:37928600-37936000	ZNF genes & repeats	Fetal Lung	lung
27	chr19:37928600-37936200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:37928800-37930200	ZNF genes & repeats	Fetal Stomach	stomach
29	chr19:37928800-37930400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
30	chr19:37928800-37930800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
31	chr19:37928800-37934600	ZNF genes & repeats	Ovary	ovary
32	chr19:37928800-37935800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
33	chr19:37928800-37936000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr19:37928800-37936200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:37928800-37936200	ZNF genes & repeats	Brain Anterior Caudate	brain
36	chr19:37928800-37936400	ZNF genes & repeats	Brain Substantia Nigra	brain
37	chr19:37928800-37936800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
38	chr19:37928800-37937200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:37928800-37938600	ZNF genes & repeats	Fetal Brain Female	brain
40	chr19:37929000-37930400	ZNF genes & repeats	Aorta	Aorta
41	chr19:37929000-37930800	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr19:37929000-37930800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
43	chr19:37929000-37931000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr19:37929000-37931000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
45	chr19:37929000-37933600	ZNF genes & repeats	Fetal Kidney	kidney
46	chr19:37929000-37935200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
47	chr19:37929000-37935400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr19:37929000-37936200	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr19:37929000-37936400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr19:37929000-37936800	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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