Variant report

Variant	rs11668217
Chromosome Location	chr19:37846174-37846175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11666138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11666699	1.00[ASN][1000 genomes]
rs11667497	1.00[ASN][1000 genomes]
rs11667853	1.00[EUR][1000 genomes]
rs11667866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11669502	1.00[ASN][1000 genomes]
rs11671057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11671358	1.00[ASN][1000 genomes]
rs11671510	1.00[ASN][1000 genomes]
rs11672064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11672330	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16973488	1.00[ASN][1000 genomes]
rs2216690	1.00[EUR][1000 genomes]
rs35895160	1.00[ASN][1000 genomes]
rs4483965	1.00[AMR][1000 genomes]
rs56822639	1.00[ASN][1000 genomes]
rs61741499	1.00[EUR][1000 genomes]
rs6508730	1.00[ASN][1000 genomes]
rs6508731	1.00[ASN][1000 genomes]
rs7245717	1.00[ASN][1000 genomes]
rs7246762	1.00[ASN][1000 genomes]
rs7257174	1.00[ASN][1000 genomes]
rs8103087	1.00[ASN][1000 genomes]
rs8104809	1.00[ASN][1000 genomes]
rs8106641	1.00[EUR][1000 genomes]
rs8108658	1.00[ASN][1000 genomes]
rs8108739	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv9718	chr19:37839070-37852872	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826200-37853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37826600-37848800	Weak transcription	Small Intestine	intestine
3	chr19:37826600-37856200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:37826800-37846600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:37826800-37847000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr19:37826800-37852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:37826800-37853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:37827000-37853400	Weak transcription	Stomach Mucosa	stomach
10	chr19:37828000-37855800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:37830000-37846800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr19:37830000-37853600	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr19:37830800-37853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr19:37831800-37846400	Strong transcription	Dnd41	blood
15	chr19:37832600-37852200	Weak transcription	Fetal Thymus	thymus
16	chr19:37832800-37850800	Weak transcription	HMEC	breast
17	chr19:37832800-37852400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr19:37834400-37847800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr19:37834600-37846800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr19:37836800-37852000	Weak transcription	Aorta	Aorta
21	chr19:37837000-37846400	Weak transcription	NHDF-Ad	bronchial
22	chr19:37837200-37847000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr19:37837800-37852200	Weak transcription	Right Ventricle	heart
24	chr19:37838800-37846800	Weak transcription	Colon Smooth Muscle	Colon
25	chr19:37839000-37847800	Weak transcription	Fetal Muscle Leg	muscle
26	chr19:37839000-37850000	Weak transcription	Spleen	Spleen
27	chr19:37839000-37850400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr19:37839000-37852800	Weak transcription	Brain Substantia Nigra	brain
29	chr19:37839200-37850200	Weak transcription	HepG2	liver
30	chr19:37839200-37851400	Weak transcription	HUVEC	blood vessel
31	chr19:37839600-37853200	Weak transcription	Hela-S3	cervix
32	chr19:37839800-37853600	Weak transcription	Fetal Heart	heart
33	chr19:37840000-37846200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:37840000-37846800	Weak transcription	Fetal Brain Male	brain
35	chr19:37840000-37846800	Weak transcription	Psoas Muscle	Psoas
36	chr19:37840200-37846400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr19:37840200-37846800	Weak transcription	Colonic Mucosa	Colon
38	chr19:37840200-37848000	Weak transcription	Osteobl	bone
39	chr19:37840200-37852000	Weak transcription	Esophagus	oesophagus
40	chr19:37840200-37852000	Weak transcription	NHEK	skin
41	chr19:37840200-37852200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr19:37840400-37846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr19:37840400-37847600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:37840400-37850000	Weak transcription	HSMMtube	muscle
45	chr19:37840400-37850600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr19:37840400-37853200	Weak transcription	NH-A	brain
47	chr19:37840600-37846400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr19:37840600-37848400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:37840600-37852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr19:37840800-37846800	Weak transcription	Thymus	Thymus

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