Variant report

Variant	rs8103087
Chromosome Location	chr19:37936258-37936259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11666699	1.00[ASN][1000 genomes]
rs11667497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11667866	1.00[ASN][1000 genomes]
rs11668217	1.00[ASN][1000 genomes]
rs11669502	1.00[ASN][1000 genomes]
rs11671057	1.00[ASN][1000 genomes]
rs11671358	1.00[ASN][1000 genomes]
rs11671510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11672064	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11672330	1.00[ASN][1000 genomes]
rs16973488	1.00[ASN][1000 genomes]
rs35895160	1.00[ASN][1000 genomes]
rs56822639	1.00[ASN][1000 genomes]
rs6508730	1.00[ASN][1000 genomes]
rs6508731	1.00[ASN][1000 genomes]
rs7245717	1.00[ASW][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7246762	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7250440	0.82[ASW][hapmap];0.85[YRI][hapmap]
rs7257174	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs7258798	0.85[YRI][hapmap]
rs7259754	0.81[AFR][1000 genomes]
rs7260625	1.00[ASW][hapmap];0.85[YRI][hapmap]
rs8104809	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108658	1.00[ASN][1000 genomes]
rs8108739	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8103087	ABHD15	trans	lymphoblastoid	seeQTL
rs8103087	CAPG	trans	lymphoblastoid	seeQTL
rs8103087	FUCA1	trans	lymphoblastoid	seeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
2	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
4	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
5	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
7	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:37925000-37943400	Weak transcription	HSMM	muscle
10	chr19:37927600-37936600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr19:37927800-37936400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:37927800-37936600	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr19:37927800-37937200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
14	chr19:37928000-37936400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:37928000-37937000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr19:37928400-37936600	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr19:37928800-37936400	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr19:37928800-37936800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
19	chr19:37928800-37937200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr19:37928800-37938600	ZNF genes & repeats	Fetal Brain Female	brain
21	chr19:37929000-37936400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr19:37929000-37936800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr19:37930200-37936800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
24	chr19:37931200-37936400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:37932400-37940200	Weak transcription	NH-A	brain
26	chr19:37933400-37936800	Weak transcription	Gastric	stomach
27	chr19:37934000-37937600	Weak transcription	Osteobl	bone
28	chr19:37934800-37939600	Weak transcription	Pancreas	Pancrea
29	chr19:37935200-37936400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
30	chr19:37935200-37936600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr19:37935200-37937600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:37935200-37938200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr19:37935400-37936400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr19:37935400-37937400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr19:37935800-37936600	ZNF genes & repeats	Left Ventricle	heart
36	chr19:37936000-37944800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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