Variant report

Variant	rs11672064
Chromosome Location	chr19:37867074-37867075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11666138	1.00[EUR][1000 genomes]
rs11666699	1.00[ASN][1000 genomes]
rs11667497	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11667853	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11667866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11668546	1.00[EUR][1000 genomes]
rs11669502	1.00[ASN][1000 genomes]
rs11671057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11671358	1.00[ASN][1000 genomes]
rs11671510	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11672330	1.00[ASN][1000 genomes]
rs16973488	1.00[ASN][1000 genomes]
rs2216690	1.00[EUR][1000 genomes]
rs35895160	1.00[ASN][1000 genomes]
rs56822639	1.00[ASN][1000 genomes]
rs61741499	1.00[EUR][1000 genomes]
rs6508730	1.00[ASN][1000 genomes]
rs6508731	1.00[ASN][1000 genomes]
rs7245717	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7246762	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7257174	1.00[ASN][1000 genomes]
rs8103087	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8104809	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8106641	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8108658	1.00[ASN][1000 genomes]
rs8108739	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8112900	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1058788	chr19:37857748-37899157	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv579464	chr19:37858660-37881556	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37862200-37867200	ZNF genes & repeats	A549	lung
2	chr19:37862600-37871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37862800-37870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr19:37862800-37871000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:37863200-37872000	Weak transcription	Fetal Heart	heart
6	chr19:37863400-37867200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:37863400-37872000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:37863800-37867200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:37863800-37868800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr19:37863800-37873200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:37864000-37867200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr19:37864000-37867600	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:37864000-37869000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr19:37864000-37869400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr19:37864000-37882000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:37864000-37882000	ZNF genes & repeats	Liver	Liver
17	chr19:37864400-37869000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
18	chr19:37864400-37869200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr19:37864400-37880600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:37864400-37880800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr19:37864600-37867200	ZNF genes & repeats	Aorta	Aorta
22	chr19:37864600-37867200	ZNF genes & repeats	Brain Germinal Matrix	brain
23	chr19:37864600-37867200	ZNF genes & repeats	Pancreas	Pancrea
24	chr19:37864600-37867200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
25	chr19:37864600-37867400	ZNF genes & repeats	Thymus	Thymus
26	chr19:37864600-37867800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr19:37864600-37868800	ZNF genes & repeats	Ovary	ovary
28	chr19:37864600-37869200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr19:37864600-37873400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr19:37864600-37880600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr19:37864600-37890600	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr19:37864800-37867600	ZNF genes & repeats	Fetal Intestine Small	intestine
33	chr19:37864800-37870800	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr19:37864800-37870800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr19:37865000-37867200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr19:37865000-37867200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
37	chr19:37865000-37867400	Strong transcription	Colon Smooth Muscle	Colon
38	chr19:37865000-37867400	Strong transcription	Placenta	Placenta
39	chr19:37865000-37867400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr19:37865000-37868800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr19:37865000-37870800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr19:37865000-37871000	Strong transcription	Brain Anterior Caudate	brain
43	chr19:37865000-37875400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr19:37865000-37880600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
45	chr19:37865200-37867200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:37865200-37867200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr19:37865200-37868600	Strong transcription	Osteobl	bone
48	chr19:37865200-37869000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr19:37865200-37870000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr19:37865200-37870400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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