Variant report

Variant	rs869859
Chromosome Location	chr6:54856585-54856586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54855908..54858278-chr6:54863712..54865364,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1155748	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs1503138	0.82[EUR][1000 genomes]
rs1503153	0.80[EUR][1000 genomes]
rs1503155	0.83[CEU][hapmap];0.92[TSI][hapmap]
rs17678648	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2221335	1.00[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs239784	0.83[CEU][hapmap]
rs239786	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs239795	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes]
rs239800	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239803	0.82[EUR][1000 genomes]
rs239804	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239809	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239811	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239814	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs239817	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs239820	0.81[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239821	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239822	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2746441	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2746442	0.90[EUR][1000 genomes]
rs3125262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3135456	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs376894	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4143677	1.00[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs4715488	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6459030	1.00[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7749067	1.00[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs7761633	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs905460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9357820	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9396004	0.80[EUR][1000 genomes]
rs973206	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs980820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs995852	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54853000-54857000	Weak transcription	HMEC	breast
3	chr6:54853400-54858400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:54856400-54857200	ZNF genes & repeats	Fetal Intestine Small	intestine

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