Variant report

Variant	rs239817
Chromosome Location	chr6:54824486-54824487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1155748	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1503138	0.84[EUR][1000 genomes]
rs1503153	0.82[EUR][1000 genomes]
rs1503155	0.80[EUR][1000 genomes]
rs17678648	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2221335	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs239784	0.83[CEU][hapmap]
rs239786	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239795	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs239800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239803	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs239804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs239820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs239822	0.91[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2746441	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2746442	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3125262	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3135456	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs376894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4143677	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4715488	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6459030	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7749067	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7761633	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs869859	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs905460	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9357820	0.81[CEU][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9367595	0.80[EUR][1000 genomes]
rs9396004	0.82[EUR][1000 genomes]
rs973206	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs980820	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs995852	0.91[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54821800-54824800	Enhancers	Dnd41	blood

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