Variant report

Variant	rs9367595
Chromosome Location	chr6:54728967-54728968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54704497..54716767-chr6:54728797..54750947,71	MCF-7	breast:
2	chr6:54718981..54722041-chr6:54724023..54729682,8	MCF-7	breast:
3	chr6:54583583..54586469-chr6:54727325..54729845,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224984	Chromatin interaction
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1155748	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1503138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1503153	0.92[EUR][1000 genomes]
rs1503155	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17678648	0.85[EUR][1000 genomes]
rs2221335	0.92[EUR][1000 genomes]
rs239786	0.83[EUR][1000 genomes]
rs239795	0.83[EUR][1000 genomes]
rs239800	0.85[EUR][1000 genomes]
rs239804	0.85[EUR][1000 genomes]
rs239809	0.85[EUR][1000 genomes]
rs239811	0.85[EUR][1000 genomes]
rs239814	0.80[EUR][1000 genomes]
rs239817	0.80[EUR][1000 genomes]
rs239820	0.85[EUR][1000 genomes]
rs239821	0.85[EUR][1000 genomes]
rs239822	0.85[EUR][1000 genomes]
rs2746441	0.83[EUR][1000 genomes]
rs2746442	0.83[EUR][1000 genomes]
rs376894	0.85[EUR][1000 genomes]
rs4143677	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4715488	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6459030	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7749067	0.92[EUR][1000 genomes]
rs7761633	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9357820	0.82[EUR][1000 genomes]
rs9396004	0.92[EUR][1000 genomes]
rs973206	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs995852	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54715400-54731200	Weak transcription	Hela-S3	cervix
2	chr6:54721200-54730000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54725400-54731400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:54725600-54729800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:54725600-54737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:54725600-54737600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:54725800-54730000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:54725800-54730000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:54725800-54730000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:54726600-54739600	Weak transcription	Small Intestine	intestine
11	chr6:54727000-54730000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr6:54727000-54730600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:54727200-54729000	Weak transcription	Fetal Heart	heart
14	chr6:54727200-54729800	Weak transcription	Stomach Mucosa	stomach
15	chr6:54727200-54730000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:54727200-54731400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:54727200-54732800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:54727200-54748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:54727400-54729000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:54727400-54729200	Weak transcription	Gastric	stomach
21	chr6:54727400-54730000	Weak transcription	Fetal Kidney	kidney
22	chr6:54727400-54740400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:54727400-54743800	Weak transcription	Pancreas	Pancrea
24	chr6:54728200-54729200	Strong transcription	HMEC	breast
25	chr6:54728400-54729200	Weak transcription	Fetal Intestine Large	intestine
26	chr6:54728400-54729800	Weak transcription	Fetal Intestine Small	intestine
27	chr6:54728600-54732800	Weak transcription	NHEK	skin

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