Variant report

Variant	rs870977
Chromosome Location	chr16:70100219-70100220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr16:70099344-70100592	A549	lung:	n/a	chr16:70099885-70099897 chr16:70099436-70099445 chr16:70099436-70099445 chr16:70099885-70099897 chr16:70099437-70099446 chr16:70099435-70099447
2	HCFC1	chr16:70099554-70100498	Hela-S3	cervix:	n/a	n/a
3	SP1	chr16:70099720-70100221	HCT-116	colon:	n/a	chr16:70099885-70099897 chr16:70099885-70099897
4	POLR2A	chr16:70100086-70100421	HepG2	liver:	n/a	n/a
5	MYBL2	chr16:70099542-70100465	HepG2	liver:	n/a	n/a
6	POLR2A	chr16:70099521-70100382	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr16:70099230-70100420	A549	lung:	n/a	n/a
8	POLR2A	chr16:70100049-70100326	A549	lung:	n/a	n/a
9	SIX5	chr16:70099901-70100229	K562	blood:	n/a	n/a
10	NRF1	chr16:70099996-70100377	H1-hESC	embryonic stem cell:	n/a	chr16:70100191-70100202 chr16:70100191-70100205 chr16:70100188-70100202 chr16:70100191-70100200 chr16:70100193-70100202 chr16:70100190-70100201
11	POLR2A	chr16:70099559-70100357	GM18951	blood:	n/a	n/a
12	HEY1	chr16:70100081-70100351	HepG2	liver:	n/a	n/a
13	POLR2A	chr16:70099454-70100480	PFSK-1	brain:	n/a	n/a
14	FOXA2	chr16:70099639-70100379	A549	lung:	n/a	n/a
15	POLR2A	chr16:70099372-70100590	SK-N-MC	brain:	n/a	n/a
16	POLR2A	chr16:70100177-70100361	MCF10A-Er-Src	breast:	n/a	n/a
17	MYBL2	chr16:70099534-70100548	HepG2	liver:	n/a	n/a
18	HEY1	chr16:70098871-70100517	HepG2	liver:	n/a	chr16:70099818-70099833 chr16:70099780-70099795 chr16:70099771-70099786 chr16:70099700-70099715
19	HEY1	chr16:70099996-70100354	K562	blood:	n/a	n/a
20	EP300	chr16:70099848-70100297	GM12878	blood:	n/a	chr16:70100086-70100093
21	POLR2A	chr16:70100080-70100429	HCT-116	colon:	n/a	n/a
22	SIN3AK20	chr16:70099536-70100521	HepG2	liver:	n/a	n/a
23	POLR2A	chr16:70099363-70100275	Gliobla	brain:	n/a	n/a
24	SP1	chr16:70099466-70100497	A549	lung:	n/a	chr16:70099885-70099897 chr16:70099885-70099897
25	POLR2A	chr16:70099565-70100295	GM12878	blood:	n/a	n/a
26	POLR2A	chr16:70098964-70100609	Hela-S3	cervix:	n/a	n/a
27	POLR2A	chr16:70100037-70100452	H1-hESC	embryonic stem cell:	n/a	n/a
28	JUND	chr16:70099586-70100369	HepG2	liver:	n/a	n/a
29	POLR2A	chr16:70099225-70100290	MCF-7	breast:	n/a	n/a
30	POLR2A	chr16:70099498-70100460	Hela-S3	cervix:	n/a	n/a
31	POLR2A	chr16:70100016-70100331	GM12878	blood:	n/a	n/a
32	SIX5	chr16:70099777-70100301	A549	lung:	n/a	n/a
33	POLR2A	chr16:70100092-70100379	ECC-1	luminal epithelium:	n/a	n/a
34	FOXM1	chr16:70099744-70100277	GM12878	blood:	n/a	n/a
35	TAF1	chr16:70099383-70100407	H1-hESC	embryonic stem cell:	n/a	n/a
36	POLR2A	chr16:70099425-70100313	GM12892	blood:	n/a	n/a
37	POLR2A	chr16:70099447-70100386	PANC-1	pancreas:	n/a	n/a
38	SIX5	chr16:70099618-70100479	A549	lung:	n/a	n/a
39	NFIC	chr16:70099715-70100230	GM12878	blood:	n/a	n/a
40	NRF1	chr16:70099991-70100371	GM12878	blood:	n/a	chr16:70100191-70100202 chr16:70100191-70100205 chr16:70100188-70100202 chr16:70100191-70100200 chr16:70100193-70100202 chr16:70100190-70100201
41	EBF1	chr16:70099846-70100222	GM12878	blood:	n/a	n/a
42	POLR2A	chr16:70100207-70100407	MCF10A-Er-Src	breast:	n/a	n/a
43	POLR2A	chr16:70100114-70100381	SK-N-SH	brain:	n/a	n/a
44	POLR2A	chr16:70099450-70100384	H1-hESC	embryonic stem cell:	n/a	n/a
45	SIN3AK20	chr16:70099437-70100432	A549	lung:	n/a	n/a
46	JUND	chr16:70099851-70100259	HepG2	liver:	n/a	n/a
47	POLR2A	chr16:70099323-70100561	U87	brain:	n/a	n/a
48	NRF1	chr16:70099696-70100414	SK-N-SH	brain:	n/a	chr16:70100191-70100202 chr16:70100191-70100205 chr16:70100188-70100202 chr16:70100191-70100200 chr16:70099774-70099783 chr16:70099772-70099781 chr16:70100193-70100202 chr16:70100190-70100201
49	POLR2A	chr16:70099383-70100526	MCF-7	breast:	n/a	n/a
50	SIN3AK20	chr16:70098556-70100358	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:70100193-70100243	NHDF-neo	bronchial:	n/a
2	chr16:70100213-70100263	PFSK-1	brain:	n/a
3	chr16:70100193-70100243	U87	brain:	n/a
4	chr16:70100199-70100249	Jurkat	blood:	n/a
5	chr16:70100193-70100243	PANC-1	pancreas:	n/a
6	chr16:70100199-70100249	HL-60	blood:	n/a
7	chr16:70100199-70100249	Hepatocyte	liver:	n/a
8	chr16:70100199-70100249	GM12878	blood:	n/a
9	chr16:70100199-70100249	SKMC	muscle:	n/a
10	chr16:70100199-70100249	ECC-1	luminal epithelium:	n/a
11	chr16:70100213-70100263	MCF-7	breast:	n/a
12	chr16:70100193-70100243	AG09319	gingival:	n/a
13	chr16:70100193-70100243	HL-60	blood:	n/a
14	chr16:70100213-70100263	AG10803	skin:	n/a
15	chr16:70100213-70100263	NHBE	bronchial:	n/a
16	chr16:70100213-70100263	LNCaP	prostate:	n/a
17	chr16:70100213-70100263	Hepatocyte	liver:	n/a
18	chr16:70100193-70100243	BE2_C	brain:	n/a
19	chr16:70100213-70100263	GM12878	blood:	n/a
20	chr16:70100213-70100263	HUVEC	blood vessel:	n/a
21	chr16:70100199-70100249	LNCaP	prostate:	n/a
22	chr16:70100213-70100263	GM12891	blood:	n/a
23	chr16:70100199-70100249	MCF10A-Er-Src	breast:	n/a
24	chr16:70100213-70100263	K562	blood:	n/a
25	chr16:70100213-70100263	NB4	blood:	n/a
26	chr16:70100193-70100243	Hepatocyte	liver:	n/a
27	chr16:70100199-70100249	PANC-1	pancreas:	n/a
28	chr16:70100213-70100263	HRPEpiC	eye:	n/a
29	chr16:70100193-70100243	MCF-7	breast:	n/a
30	chr16:70100213-70100263	MCF10A-Er-Src	breast:	n/a
31	chr16:70100193-70100243	LNCaP	prostate:	n/a
32	chr16:70100199-70100249	HIPEpiC	eye:	n/a
33	chr16:70100193-70100243	AG10803	skin:	n/a
34	chr16:70100213-70100263	GM06990	blood:	n/a
35	chr16:70100213-70100263	HRE	kidney:	n/a
36	chr16:70100199-70100249	SK-N-SH_RA	brain:	n/a
37	chr16:70100213-70100263	HCM	heart:	n/a
38	chr16:70100199-70100249	NH-A	brain:	n/a
39	chr16:70100213-70100263	Hela-S3	cervix:	n/a
40	chr16:70100199-70100249	ProgFib	skin:	n/a
41	chr16:70100193-70100243	AoSMC	blood vessel:	n/a
42	chr16:70100213-70100263	HCF	heart:	n/a
43	chr16:70100193-70100243	CMK	blood:	n/a
44	chr16:70100213-70100263	AoSMC	blood vessel:	n/a
45	chr16:70100193-70100243	SAEC	small airway:	n/a
46	chr16:70100193-70100243	HCF	heart:	n/a
47	chr16:70100199-70100249	AG10803	skin:	n/a
48	chr16:70100193-70100243	PrEC	prostate:	n/a
49	chr16:70100193-70100243	HRCEpiC	kidney:	n/a
50	chr16:70100193-70100243	PFSK-1	brain:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:54673381..54674330-chr16:70099343..70100334,2	Hela-S3	cervix:
2	chr16:15066889..15068819-chr16:70099825..70101888,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-419C5.2.1-1	chr16:70100122-70100332	NONHSAT143386

Variant related genes	Relation type
PDXDC2P	TF binding region
ENSG00000255185	TF binding region
ENSG00000255185	CpG island
PDXDC2P	CpG island
ENSG00000179889	Chromatin interaction
ENSG00000135486	Chromatin interaction
ENSG00000094916	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1820189	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58008951	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61191725	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7188705	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73582166	0.81[AFR][1000 genomes]
rs870976	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:133 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062171	chr16:69854267-70188585	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv542941	chr16:69854267-70188585	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1059249	chr16:69854467-70188446	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv542942	chr16:69854467-70188446	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	esv2758428	chr16:69855122-70313222	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	esv2758652	chr16:69855122-70313222	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1853	chr16:69962296-70268856	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
8	esv1824931	chr16:69968850-70230516	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv1829372	chr16:69968850-70230516	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv1830874	chr16:69968850-70298988	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
11	esv2754644	chr16:69971965-70191118	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	esv1823631	chr16:69975086-70103765	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1058789	chr16:69976021-70180213	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
14	esv2762188	chr16:69976033-70281778	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv906824	chr16:69976479-70191333	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
16	nsv906825	chr16:69976479-70242125	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
17	nsv827716	chr16:69976588-70237575	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
18	esv1821617	chr16:69976907-70103765	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
19	nsv1056685	chr16:69977397-70198384	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
20	esv1819878	chr16:69977698-70107795	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
21	esv1820498	chr16:69977698-70110468	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
22	nsv428328	chr16:69986563-70313222	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
23	esv1842931	chr16:69988100-70104711	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
24	esv1804280	chr16:69988100-70230516	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
25	esv1802826	chr16:69988100-70287669	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
26	nsv1057982	chr16:69988374-70110034	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1056602	chr16:69988374-70119741	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
28	nsv1060404	chr16:69988374-70125162	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
29	nsv1056988	chr16:69988374-70139542	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
30	nsv1059337	chr16:69988374-70180213	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
31	nsv1060556	chr16:69988374-70186126	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
32	nsv1065878	chr16:69988374-70187182	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
33	nsv1057434	chr16:69988374-70198384	Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
34	nsv1063690	chr16:69988374-70213032	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
35	nsv906826	chr16:69990319-70126765	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
36	nsv906827	chr16:69990319-70141487	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
37	nsv906828	chr16:69990319-70157568	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
38	nsv906829	chr16:69990319-70170186	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
39	nsv906830	chr16:69990319-70182025	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
40	nsv906831	chr16:69990319-70196312	Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
41	nsv906832	chr16:69990319-70207808	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
42	nsv906833	chr16:69990319-70218367	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
43	nsv906834	chr16:69990319-70242125	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
44	esv1821001	chr16:69999932-70237077	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
45	esv1833444	chr16:70000061-70103765	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
46	esv3492398	chr16:70000171-70223061	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
47	esv3492399	chr16:70000171-70223061	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
48	esv3510861	chr16:70007006-70234137	Weak transcription Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
49	esv3510862	chr16:70007006-70234137	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
50	nsv827717	chr16:70010241-70197941	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70097400-70101200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:70097600-70101200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr16:70097800-70101000	Active TSS	Fetal Intestine Small	intestine
4	chr16:70098000-70100600	Active TSS	Colonic Mucosa	Colon
5	chr16:70098000-70100800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:70098000-70100800	Active TSS	Fetal Intestine Large	intestine
7	chr16:70098000-70101000	Active TSS	Duodenum Mucosa	Duodenum
8	chr16:70098200-70100400	Active TSS	Osteobl	bone
9	chr16:70098200-70100800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:70098200-70100800	Active TSS	Brain Anterior Caudate	brain
11	chr16:70098200-70101000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:70098200-70101000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr16:70098200-70101000	Active TSS	Rectal Smooth Muscle	rectum
14	chr16:70098200-70101200	Active TSS	HMEC	breast
15	chr16:70098400-70100400	Active TSS	Muscle Satellite Cultured Cells	--
16	chr16:70098400-70100600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr16:70098400-70100600	Active TSS	Brain Germinal Matrix	brain
18	chr16:70098400-70100600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr16:70098400-70101000	Active TSS	H9 Cell Line	embryonic stem cell
20	chr16:70098400-70101000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr16:70098400-70101000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:70098400-70101000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:70098400-70101000	Active TSS	Fetal Kidney	kidney
24	chr16:70098400-70101200	Active TSS	NHEK	skin
25	chr16:70098600-70100400	Active TSS	Colon Smooth Muscle	Colon
26	chr16:70098600-70100400	Active TSS	Placenta	Placenta
27	chr16:70098600-70100400	Active TSS	Lung	lung
28	chr16:70098600-70100400	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr16:70098600-70100400	Active TSS	Small Intestine	intestine
30	chr16:70098600-70100400	Active TSS	HSMM	muscle
31	chr16:70098600-70100600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr16:70098600-70100600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr16:70098600-70100600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr16:70098600-70100600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr16:70098600-70100600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr16:70098600-70100600	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr16:70098600-70100600	Active TSS	Aorta	Aorta
38	chr16:70098600-70100600	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr16:70098600-70100600	Active TSS	Esophagus	oesophagus
40	chr16:70098600-70100600	Active TSS	HSMMtube	muscle
41	chr16:70098600-70100600	Active TSS	K562	blood
42	chr16:70098600-70100600	Active TSS	NHDF-Ad	bronchial
43	chr16:70098600-70100600	Active TSS	NHLF	lung
44	chr16:70098600-70100800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr16:70098600-70100800	Active TSS	Primary T cells from cord blood	blood
46	chr16:70098600-70100800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr16:70098600-70101000	Active TSS	H1 Cell Line	embryonic stem cell
48	chr16:70098600-70101000	Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr16:70098600-70101000	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr16:70098600-70101000	Active TSS	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links