Variant report

Variant	rs872330
Chromosome Location	chr11:119457358-119457359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10892430	1.00[AMR][1000 genomes]
rs10892431	1.00[AMR][1000 genomes]
rs11217401	1.00[AMR][1000 genomes]
rs17145091	1.00[AMR][1000 genomes]
rs4245200	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv975232	chr11:119456883-119457383	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119456000-119461200	Weak transcription	K562	blood
2	chr11:119456200-119457600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:119456200-119457800	Enhancers	Brain Anterior Caudate	brain
4	chr11:119456200-119460600	Weak transcription	HMEC	breast
5	chr11:119456400-119459600	Weak transcription	Brain Angular Gyrus	brain
6	chr11:119456400-119459800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:119456400-119459800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:119456400-119459800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:119456400-119459800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:119456400-119459800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:119456400-119459800	Weak transcription	Esophagus	oesophagus
12	chr11:119456400-119460800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:119456400-119461400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:119456400-119462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:119456600-119459600	Weak transcription	Brain Substantia Nigra	brain
16	chr11:119456600-119459800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:119456600-119465200	Weak transcription	HUVEC	blood vessel
18	chr11:119456800-119457400	Enhancers	NHEK	skin
19	chr11:119456800-119460200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:119457000-119460600	Weak transcription	Stomach Mucosa	stomach
21	chr11:119457200-119459800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:119457200-119460800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:119457200-119461000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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