Variant report

Variant	rs17145091
Chromosome Location	chr11:119474579-119474580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10892430	1.00[AMR][1000 genomes]
rs10892431	1.00[AMR][1000 genomes]
rs11217351	0.96[ASN][1000 genomes]
rs11217352	0.96[ASN][1000 genomes]
rs11217359	0.88[ASN][1000 genomes]
rs11217401	1.00[AMR][1000 genomes]
rs12222551	1.00[ASN][1000 genomes]
rs12223899	1.00[ASN][1000 genomes]
rs12225444	1.00[ASN][1000 genomes]
rs12225729	0.96[ASN][1000 genomes]
rs17123112	1.00[ASN][1000 genomes]
rs3751019	0.96[ASN][1000 genomes]
rs4245200	1.00[AMR][1000 genomes]
rs872330	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv983068	chr11:119472667-119476571	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119471200-119476000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:119472200-119477400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:119472400-119475400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:119472600-119475600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:119472600-119476600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:119473000-119475000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:119474200-119475000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:119474400-119475200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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