Variant report

Variant	rs3751019
Chromosome Location	chr11:119478886-119478887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PVRL1-1	chr11:119478390-119486120	XLOC_009577

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11217351	1.00[ASN][1000 genomes]
rs11217352	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11217359	0.92[ASN][1000 genomes]
rs11217362	1.00[JPT][hapmap]
rs12222551	0.96[ASN][1000 genomes]
rs12223899	0.96[ASN][1000 genomes]
rs12225444	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12225729	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17123112	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17145091	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:119475600-119484000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119476600-119479200	Enhancers	Brain Anterior Caudate	brain
4	chr11:119477000-119480000	Enhancers	Brain Angular Gyrus	brain
5	chr11:119477400-119479200	Enhancers	Brain Substantia Nigra	brain
6	chr11:119477600-119479400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:119477600-119479800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119477800-119479000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr11:119477800-119479800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:119477800-119479800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr11:119478000-119479200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:119478000-119479800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr11:119478200-119479800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr11:119478400-119479000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:119478400-119479000	Enhancers	HMEC	breast
16	chr11:119478400-119479200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:119478400-119479200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:119478400-119479600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr11:119478400-119480000	Enhancers	Brain Germinal Matrix	brain
20	chr11:119478600-119479400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:119478600-119479600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:119478600-119479600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:119478600-119479600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:119478600-119480000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:119478800-119479000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
26	chr11:119478800-119479000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr11:119478800-119479000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
28	chr11:119478800-119479000	Enhancers	Stomach Mucosa	stomach
29	chr11:119478800-119479200	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr11:119478800-119479200	Active TSS	Brain Hippocampus Middle	brain
31	chr11:119478800-119479400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr11:119478800-119479600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell

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