Variant report

Variant	rs12225729
Chromosome Location	chr11:119477709-119477710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11217351	1.00[ASN][1000 genomes]
rs11217352	1.00[ASN][1000 genomes]
rs11217359	0.92[ASN][1000 genomes]
rs12222551	0.96[ASN][1000 genomes]
rs12223899	0.96[ASN][1000 genomes]
rs12225444	0.96[ASN][1000 genomes]
rs17123112	0.96[ASN][1000 genomes]
rs17145091	0.96[ASN][1000 genomes]
rs3751019	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:119475600-119484000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:119476200-119478400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:119476600-119478800	Enhancers	Brain Cingulate Gyrus	brain
5	chr11:119476600-119479200	Enhancers	Brain Anterior Caudate	brain
6	chr11:119477000-119478000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:119477000-119480000	Enhancers	Brain Angular Gyrus	brain
8	chr11:119477200-119478200	Enhancers	Brain Hippocampus Middle	brain
9	chr11:119477400-119479200	Enhancers	Brain Substantia Nigra	brain
10	chr11:119477600-119477800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
11	chr11:119477600-119477800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:119477600-119479400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:119477600-119479800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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