Variant report

Variant	rs12225444
Chromosome Location	chr11:119471864-119471865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11217336	1.00[AFR][1000 genomes]
rs11217337	1.00[AFR][1000 genomes]
rs11217339	1.00[AFR][1000 genomes]
rs11217341	1.00[AFR][1000 genomes]
rs11217351	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11217352	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11217359	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11217362	1.00[JPT][hapmap]
rs11217363	1.00[AFR][1000 genomes]
rs11217367	1.00[AFR][1000 genomes]
rs11217375	1.00[AFR][1000 genomes]
rs12222551	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12223899	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12225729	0.96[ASN][1000 genomes]
rs12574200	1.00[AFR][1000 genomes]
rs17123112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17145091	1.00[ASN][1000 genomes]
rs3751019	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs59681945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119468600-119473400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:119469400-119473800	Weak transcription	Pancreas	Pancrea
3	chr11:119471000-119472600	Enhancers	Brain Anterior Caudate	brain
4	chr11:119471200-119476000	Weak transcription	Brain Angular Gyrus	brain
5	chr11:119471400-119472400	Enhancers	Brain Hippocampus Middle	brain
6	chr11:119471800-119472200	Enhancers	Brain Substantia Nigra	brain
7	chr11:119471800-119472400	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:119471800-119472600	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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