Variant report

Variant	rs11217363
Chromosome Location	chr11:119500716-119500717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11217336	1.00[AFR][1000 genomes]
rs11217337	1.00[AFR][1000 genomes]
rs11217339	1.00[AFR][1000 genomes]
rs11217341	1.00[AFR][1000 genomes]
rs11217351	1.00[AFR][1000 genomes]
rs11217352	1.00[AFR][1000 genomes]
rs11217359	1.00[AFR][1000 genomes]
rs11217367	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11217375	1.00[AFR][1000 genomes]
rs11217439	1.00[AMR][1000 genomes]
rs12222551	1.00[AFR][1000 genomes]
rs12223899	1.00[AFR][1000 genomes]
rs12225444	1.00[AFR][1000 genomes]
rs12574200	1.00[AFR][1000 genomes]
rs4936489	0.80[ASN][1000 genomes]
rs59681945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119493800-119501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr11:119494400-119502800	Weak transcription	Spleen	Spleen
3	chr11:119497400-119502200	Enhancers	Fetal Muscle Leg	muscle
4	chr11:119498000-119501200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:119498200-119503800	Weak transcription	HSMMtube	muscle
6	chr11:119498200-119510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:119499600-119501600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119500000-119501200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119500000-119501400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:119500000-119501600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:119500200-119501000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:119500200-119501000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:119500400-119501000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr11:119500600-119501600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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