Variant report

Variant	rs11217337
Chromosome Location	chr11:119464498-119464499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11217335	1.00[ASN][1000 genomes]
rs11217336	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11217339	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217341	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217351	1.00[AFR][1000 genomes]
rs11217352	1.00[AFR][1000 genomes]
rs11217359	1.00[AFR][1000 genomes]
rs11217363	1.00[AFR][1000 genomes]
rs11217367	1.00[AFR][1000 genomes]
rs11217375	1.00[AFR][1000 genomes]
rs12222551	1.00[AFR][1000 genomes]
rs12223899	1.00[AFR][1000 genomes]
rs12224076	1.00[ASN][1000 genomes]
rs12225440	1.00[ASN][1000 genomes]
rs12225444	1.00[AFR][1000 genomes]
rs12226741	1.00[ASN][1000 genomes]
rs12574200	1.00[AFR][1000 genomes]
rs59681945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119456600-119465200	Weak transcription	HUVEC	blood vessel
2	chr11:119461600-119465000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:119461600-119465000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:119461600-119465200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:119461800-119465200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:119463000-119465000	Weak transcription	K562	blood
7	chr11:119463000-119465000	Weak transcription	NH-A	brain
8	chr11:119463000-119465200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:119463000-119465200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:119463000-119468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:119463600-119465000	Weak transcription	Osteobl	bone
12	chr11:119463800-119465000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:119464000-119465200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:119464200-119466800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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