Variant report

Variant	rs12226741
Chromosome Location	chr11:119462448-119462449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119460674..119462520-chr11:119465191..119467213,2	K562	blood:
2	chr11:119457415..119459140-chr11:119460366..119462940,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11217335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11217336	0.90[ASN][1000 genomes]
rs11217337	1.00[ASN][1000 genomes]
rs11217339	1.00[ASN][1000 genomes]
rs11217341	1.00[ASN][1000 genomes]
rs11217352	1.00[JPT][hapmap]
rs11217362	1.00[JPT][hapmap]
rs12224076	1.00[ASN][1000 genomes]
rs12225440	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12225444	1.00[JPT][hapmap]
rs17123112	1.00[JPT][hapmap]
rs3751019	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119456600-119465200	Weak transcription	HUVEC	blood vessel
2	chr11:119459800-119463000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr11:119460200-119462800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:119460200-119463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:119460400-119463000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119460400-119463000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:119460600-119462600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119460600-119463000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:119460600-119463000	Enhancers	HMEC	breast
10	chr11:119460800-119463000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:119460800-119463200	Enhancers	NHEK	skin
12	chr11:119461000-119463000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:119461000-119463000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:119461000-119463600	Weak transcription	Esophagus	oesophagus
15	chr11:119461200-119462800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:119461200-119463000	Enhancers	K562	blood
17	chr11:119461200-119463000	Enhancers	NH-A	brain
18	chr11:119461600-119465000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:119461600-119465000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr11:119461600-119465200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:119461800-119462800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:119461800-119463000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:119461800-119465200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:119462000-119462600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr11:119462000-119462800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:119462000-119463000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:119462000-119463000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:119462000-119463600	Enhancers	Brain Germinal Matrix	brain
29	chr11:119462200-119463000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr11:119462400-119463800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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