Variant report

Variant	rs11217341
Chromosome Location	chr11:119465939-119465940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119460674..119462520-chr11:119465191..119467213,2	K562	blood:
2	chr11:119465917..119467701-chr11:119469352..119471236,2	K562	blood:
3	chr11:119465019..119467134-chr11:119469094..119471090,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11217335	1.00[ASN][1000 genomes]
rs11217336	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11217337	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217339	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11217351	1.00[AFR][1000 genomes]
rs11217352	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs11217359	1.00[AFR][1000 genomes]
rs11217362	1.00[JPT][hapmap]
rs11217363	1.00[AFR][1000 genomes]
rs11217367	1.00[AFR][1000 genomes]
rs11217375	1.00[AFR][1000 genomes]
rs12222551	1.00[AFR][1000 genomes]
rs12223899	1.00[AFR][1000 genomes]
rs12224076	1.00[ASN][1000 genomes]
rs12225440	1.00[ASN][1000 genomes]
rs12225444	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12226741	1.00[ASN][1000 genomes]
rs12574200	1.00[AFR][1000 genomes]
rs17123112	1.00[JPT][hapmap]
rs3751019	1.00[JPT][hapmap]
rs59681945	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119463000-119468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:119464200-119466800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:119465000-119466000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:119465000-119466000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:119465000-119466000	Enhancers	Adipose Nuclei	Adipose
6	chr11:119465000-119466200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:119465000-119466200	Enhancers	HSMM	muscle
8	chr11:119465000-119466400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:119465000-119466600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:119465000-119466600	Enhancers	Osteobl	bone
11	chr11:119465000-119466800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:119465000-119466800	Enhancers	NH-A	brain
13	chr11:119465000-119466800	Enhancers	NHLF	lung
14	chr11:119465200-119466000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:119465200-119466000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:119465200-119466000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:119465200-119466000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:119465200-119466000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:119465200-119466000	Flanking Active TSS	K562	blood
20	chr11:119465200-119466000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:119465200-119466400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:119465200-119466400	Enhancers	HSMMtube	muscle
23	chr11:119465200-119466600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:119465200-119466600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:119465200-119466600	Enhancers	HUVEC	blood vessel
26	chr11:119465200-119466600	Enhancers	NHDF-Ad	bronchial
27	chr11:119465200-119466800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:119465400-119466000	Enhancers	Primary hematopoietic stem cells	blood
29	chr11:119465400-119466000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:119465800-119466400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:119465800-119469400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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