Variant report

Variant	rs12224076
Chromosome Location	chr11:119462970-119462971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11217335	1.00[ASN][1000 genomes]
rs11217336	0.90[ASN][1000 genomes]
rs11217337	1.00[ASN][1000 genomes]
rs11217339	1.00[ASN][1000 genomes]
rs11217341	1.00[ASN][1000 genomes]
rs12225440	1.00[ASN][1000 genomes]
rs12226741	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119456600-119465200	Weak transcription	HUVEC	blood vessel
2	chr11:119459800-119463000	Enhancers	H9 Cell Line	embryonic stem cell
3	chr11:119460200-119463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:119460400-119463000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119460400-119463000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:119460600-119463000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119460600-119463000	Enhancers	HMEC	breast
8	chr11:119460800-119463000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:119460800-119463200	Enhancers	NHEK	skin
10	chr11:119461000-119463000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr11:119461000-119463000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:119461000-119463600	Weak transcription	Esophagus	oesophagus
13	chr11:119461200-119463000	Enhancers	K562	blood
14	chr11:119461200-119463000	Enhancers	NH-A	brain
15	chr11:119461600-119465000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:119461600-119465000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:119461600-119465200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:119461800-119463000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:119461800-119465200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:119462000-119463000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:119462000-119463000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:119462000-119463600	Enhancers	Brain Germinal Matrix	brain
23	chr11:119462200-119463000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:119462400-119463800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:119462600-119463000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:119462800-119463200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:119462800-119463600	Enhancers	Osteobl	bone
28	chr11:119462800-119463800	Enhancers	Adipose Nuclei	Adipose

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