Variant report

Variant	rs17123112
Chromosome Location	chr11:119475955-119475956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11217351	0.96[ASN][1000 genomes]
rs11217352	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11217359	0.88[ASN][1000 genomes]
rs11217362	1.00[JPT][hapmap]
rs12222551	1.00[ASN][1000 genomes]
rs12223899	1.00[ASN][1000 genomes]
rs12225444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12225729	0.96[ASN][1000 genomes]
rs17145091	1.00[ASN][1000 genomes]
rs3751019	1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv983068	chr11:119472667-119476571	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119471200-119476000	Weak transcription	Brain Angular Gyrus	brain
2	chr11:119471800-119485800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:119472200-119477400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:119472600-119476600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:119475400-119476200	Enhancers	Brain Hippocampus Middle	brain
6	chr11:119475600-119484000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119475800-119476600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:119475800-119477000	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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