Variant report

Variant	rs873200
Chromosome Location	chr2:12154191-12154192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12149476..12151758-chr2:12152643..12155527,2	K562	blood:
2	chr2:12146656..12149397-chr2:12152065..12154381,3	K562	blood:

Variant related genes	Relation type
ENSG00000224184	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10192192	0.94[ASN][1000 genomes]
rs10209772	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73181447	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12149800-12154200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:12152800-12155000	Enhancers	GM12878-XiMat	blood
3	chr2:12153600-12155000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:12153600-12155000	Enhancers	Primary B cells from cord blood	blood
5	chr2:12153600-12155600	Enhancers	HSMM	muscle
6	chr2:12153800-12154200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr2:12153800-12154200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:12153800-12155000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:12153800-12155000	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:12153800-12155000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:12153800-12155000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:12153800-12155200	Enhancers	NHDF-Ad	bronchial
13	chr2:12153800-12155200	Enhancers	NHLF	lung
14	chr2:12153800-12155400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr2:12153800-12155400	Enhancers	HSMMtube	muscle
16	chr2:12154000-12154600	Enhancers	K562	blood
17	chr2:12154000-12154800	Enhancers	Spleen	Spleen
18	chr2:12154000-12155000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:12154000-12155000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr2:12154000-12155000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:12154000-12155000	Enhancers	Osteobl	bone
22	chr2:12154000-12155200	Enhancers	Fetal Muscle Leg	muscle
23	chr2:12154000-12155400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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