Variant report

Variant	rs73181447
Chromosome Location	chr2:12159051-12159052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10192192	0.94[ASN][1000 genomes]
rs10209772	0.88[ASN][1000 genomes]
rs56787198	1.00[AMR][1000 genomes]
rs60680980	1.00[AMR][1000 genomes]
rs60925939	1.00[AMR][1000 genomes]
rs73181465	1.00[AMR][1000 genomes]
rs873200	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12155000-12159200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:12155000-12164000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:12155400-12159800	Weak transcription	HSMMtube	muscle
4	chr2:12157800-12163000	ZNF genes & repeats	GM12878-XiMat	blood
5	chr2:12158600-12159200	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:12158800-12160800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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