Variant report

Variant	rs73181465
Chromosome Location	chr2:12188976-12188977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12003510..12004337-chr2:12188494..12189188,2	MCF-7	breast:
2	chr2:12003714..12004353-chr2:12188666..12189311,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GREB1-10	chr2:12188883-12189162	NONHSAT069209
2	lnc-GREB1-10	chr2:12188883-12189125	NONHSAT069216

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16858053	1.00[EUR][1000 genomes]
rs16858064	1.00[EUR][1000 genomes]
rs2119143	1.00[EUR][1000 genomes]
rs56787198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60680980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60925939	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73175477	1.00[EUR][1000 genomes]
rs73181447	1.00[AMR][1000 genomes]
rs7566571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv999704	chr2:12153766-12243960	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1005069	chr2:12161023-12242734	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1000696	chr2:12162843-12241022	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12181600-12193200	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:12182600-12189200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:12182600-12189400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:12183600-12189400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:12184200-12190400	Weak transcription	K562	blood
6	chr2:12185400-12189200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr2:12185400-12190400	Weak transcription	Dnd41	blood
8	chr2:12185600-12189400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:12185600-12190400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr2:12185600-12191200	Enhancers	Primary B cells from cord blood	blood
11	chr2:12185800-12189200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr2:12185800-12190200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:12186000-12189000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:12187000-12189800	Weak transcription	NHLF	lung
15	chr2:12187000-12190400	Weak transcription	NH-A	brain
16	chr2:12187000-12191800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:12187000-12191800	Enhancers	GM12878-XiMat	blood
18	chr2:12187000-12192000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:12187200-12190400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:12187400-12189000	Enhancers	Fetal Muscle Leg	muscle
21	chr2:12187400-12190200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:12187400-12190200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:12187600-12190400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:12187600-12190400	Weak transcription	Osteobl	bone
25	chr2:12187800-12190400	Weak transcription	HSMM	muscle
26	chr2:12188000-12190400	Weak transcription	HSMMtube	muscle
27	chr2:12188200-12190600	Weak transcription	HMEC	breast
28	chr2:12188400-12189000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:12188400-12189600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr2:12188600-12189000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:12188600-12189000	Enhancers	Fetal Muscle Trunk	muscle
32	chr2:12188600-12189000	Enhancers	Spleen	Spleen
33	chr2:12188600-12189200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr2:12188600-12190800	Enhancers	Primary T cells from cord blood	blood
35	chr2:12188800-12189000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr2:12188800-12189000	Enhancers	Fetal Brain Female	brain
37	chr2:12188800-12189400	Enhancers	Fetal Brain Male	brain
38	chr2:12188800-12190800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:12188800-12191200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr2:12188800-12196000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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