Variant report

Variant	rs7566571
Chromosome Location	chr2:12081453-12081454
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16858053	1.00[EUR][1000 genomes]
rs16858064	1.00[EUR][1000 genomes]
rs2119143	1.00[EUR][1000 genomes]
rs56787198	1.00[EUR][1000 genomes]
rs60925939	1.00[EUR][1000 genomes]
rs73175477	1.00[EUR][1000 genomes]
rs73181465	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12072600-12084600	Weak transcription	Primary B cells from cord blood	blood
2	chr2:12074400-12084200	Weak transcription	GM12878-XiMat	blood
3	chr2:12079400-12090600	Weak transcription	Esophagus	oesophagus
4	chr2:12080400-12081600	Flanking Active TSS	K562	blood
5	chr2:12080800-12081600	Enhancers	Fetal Heart	heart
6	chr2:12081400-12082400	Enhancers	Fetal Lung	lung
7	chr2:12081400-12085600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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