Variant report

Variant	rs73175477
Chromosome Location	chr2:12074335-12074336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16858053	1.00[EUR][1000 genomes]
rs16858064	1.00[EUR][1000 genomes]
rs2119143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2165218	1.00[AMR][1000 genomes]
rs56787198	1.00[EUR][1000 genomes]
rs60925939	1.00[EUR][1000 genomes]
rs6742751	1.00[AMR][1000 genomes]
rs6754419	1.00[AMR][1000 genomes]
rs73175475	1.00[AFR][1000 genomes]
rs73175481	1.00[AMR][1000 genomes]
rs73181465	1.00[EUR][1000 genomes]
rs7566571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12070600-12074400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:12071200-12078400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:12071200-12081200	Weak transcription	Right Atrium	heart
4	chr2:12072200-12074400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr2:12072600-12084600	Weak transcription	Primary B cells from cord blood	blood
6	chr2:12072800-12078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:12073400-12075000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:12073400-12075000	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:12073800-12074800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:12074200-12074400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links